myRT

myRT report for GCA_000457405.1_Esch_coli_HVH_100_4-2850729_V1

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Seq: KE699700.1 Escherichia coli HVH 100 (4-2850729) genomic scaffold acYzQ-supercont1.1, whole genome shotgun sequence (1115969 bp)
Overview 1 RT 1: 8270-13078 bp 2 RT 2: 70778-73923 bp 3 RT 3: 86233-90021 bp Neighborhood of RT #1 [8270, 13083] AdoMet_MTases RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #2 [70778, 74657] PRK10173 PRK10173 RVT-GII PHA02517 rve Neighborhood of RT #3 [86233, 90059] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 8270-8833 bp Ori: EQQ45133.1 Feature: domain Description: AdoMet_MTases Location: 8432-8732 bp Feature: domain Description: AdoMet_MTases Location: 8432-8732 bp Feature: gene Location: 8833-9069 bp Feature: gene Location: 10257-12158 bp Ori: EQQ45003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10524-11355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0524-1 1 355 bp Feature: domain Description: Intron_maturas2 Location: 11469-11727 bp Feature: domain Description: Intron_maturas2 Location: 1 1 469-1 1 727 bp Feature: domain Description: HNHc Note: nucleases Location: 11901-12063 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 901 -1 2063 bp Feature: gene Location: 12353-12793 bp Ori: EQQ45004.1 Feature: domain Description: PRK13732 Location: 12356-12791 bp Feature: domain Description: PRK1 3732 Location: 1 2356-1 2791 bp Feature: gene Location: 12850-13083 bp Ori: EQQ45005.1 Feature: domain Description: DUF905 Location: 12880-13078 bp Feature: domain Description: DUF905 Location: 1 2880-1 3078 bp Feature: gene Location: 70778-71227 bp Ori: EQQ45069.1 Feature: domain Description: PRK10173 Location: 70781-71219 bp Feature: domain Description: PRK1 01 73 Location: 70781 -71 21 9 bp Feature: gene Location: 71202-71522 bp Ori: EQQ45070.1 Feature: domain Description: PRK10173 Location: 71205-71433 bp Feature: domain Description: PRK1 01 73 Location: 71 205-71 433 bp Feature: gene Location: 71561-72064 bp Ori: EQQ45071.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71834-71903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 834-71 903 bp Feature: gene Location: 72656-72937 bp Ori: EQQ45072.1 Feature: domain Description: PHA02517 Location: 72659-72872 bp Feature: domain Description: PHA0251 7 Location: 72659-72872 bp Feature: gene Location: 73158-74657 bp Ori: EQQ45073.1 Feature: domain Description: rve Location: 73530-73923 bp Feature: domain Description: rve Location: 73530-73923 bp Feature: gene Location: 86233-86559 bp Ori: EQQ45087.1 Feature: domain Description: InsE Location: 86236-86557 bp Feature: domain Description: InsE Location: 86236-86557 bp Feature: gene Location: 86559-87038 bp Ori: EQQ45088.1 Feature: domain Description: PHA02517 Location: 86619-86973 bp Feature: domain Description: PHA0251 7 Location: 8661 9-86973 bp Feature: gene Location: 87630-89153 bp Ori: EQQ45089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87903-88635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87903-88635 bp Feature: domain Description: GIIM Note: maturase Location: 88710-88908 bp Feature: domain Description: GIIM Note: maturase Location: 8871 0-88908 bp Feature: gene Location: 89270-89626 bp Ori: EQQ45090.1 Feature: domain Description: PHA02517 Location: 89273-89582 bp Feature: domain Description: PHA0251 7 Location: 89273-89582 bp Feature: gene Location: 89655-90059 bp Ori: EQQ45091.1 Feature: domain Description: InsE Location: 89685-90021 bp Feature: domain Description: InsE Location: 89685-90021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), PHA02517 (putative transposase OrfB; Reviewed), rve (pfam00665), InsE (COG2963)
GIIM (pfam08388)

Seq: KE699701.1 Escherichia coli HVH 100 (4-2850729) genomic scaffold acYzQ-supercont1.2, whole genome shotgun sequence (2429813 bp)
Overview 1 RT 1: 103983-108507 bp Neighborhood of RT #1 [103983, 108656] HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 103983-104369 bp Feature: gene Location: 104445-105344 bp Ori: EQQ40919.1 Feature: domain Description: HTH_33 Location: 104607-104769 bp Feature: domain Description: HTH_33 Location: 104607-104769 bp Feature: domain Description: DDE_3 Location: 104811-105240 bp Feature: domain Description: DDE_3 Location: 104811-1052 40 bp Feature: gene Location: 105446-106816 bp Ori: EQQ40920.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 105707-106163 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 105707-106163 bp Feature: gene Location: 106855-107634 bp Ori: EQQ40921.1 Feature: domain Description: PRK09183 Location: 106861-107632 bp Feature: domain Description: PRK09183 Location: 106861-107632 bp Feature: gene Location: 107634-108656 bp Ori: EQQ40922.1 Feature: domain Description: COG4584 Location: 107637-108507 bp Feature: domain Description: COG4584 Location: 107637-108507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )