myRT

myRT report for GCA_000457475.1_Esch_coli_HVH_106_4-6881831_V1

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Seq: KE699739.1 Escherichia coli HVH 106 (4-6881831) genomic scaffold acXuP-supercont1.12, whole genome shotgun sequence (77910 bp)
Overview 1 RT 1: 19320-22001 bp 2 RT 2: 32340-36128 bp Neighborhood of RT #1 [19320, 22003] PRK10173 PRK10173 RVT-GII PHA02517 InsE Neighborhood of RT #2 [32340, 36166] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 19320-19769 bp Ori: EQQ53475.1 Feature: domain Description: PRK10173 Location: 19323-19761 bp Feature: domain Description: PRK1 01 73 Location: 1 9323-1 9761 bp Feature: gene Location: 19744-20064 bp Ori: EQQ53476.1 Feature: domain Description: PRK10173 Location: 19747-19975 bp Feature: domain Description: PRK1 01 73 Location: 1 9747-1 9975 bp Feature: gene Location: 20103-20606 bp Ori: EQQ53477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20376-20445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20376-20445 bp Feature: gene Location: 21198-21677 bp Ori: EQQ53478.1 Feature: domain Description: PHA02517 Location: 21258-21612 bp Feature: domain Description: PHA0251 7 Location: 21 258-21 61 2 bp Feature: gene Location: 21677-22003 bp Ori: EQQ53479.1 Feature: domain Description: InsE Location: 21680-22001 bp Feature: domain Description: InsE Location: 21 680-22001 bp Feature: gene Location: 32340-32666 bp Ori: EQQ53492.1 Feature: domain Description: InsE Location: 32343-32664 bp Feature: domain Description: InsE Location: 32343-32664 bp Feature: gene Location: 32666-33145 bp Ori: EQQ53493.1 Feature: domain Description: PHA02517 Location: 32726-33080 bp Feature: domain Description: PHA0251 7 Location: 32726-33080 bp Feature: gene Location: 33737-35260 bp Ori: EQQ53494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34010-34742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401 0-34742 bp Feature: domain Description: GIIM Note: maturase Location: 34817-35015 bp Feature: domain Description: GIIM Note: maturase Location: 3481 7-3501 5 bp Feature: gene Location: 35377-35733 bp Ori: EQQ53495.1 Feature: domain Description: PHA02517 Location: 35380-35689 bp Feature: domain Description: PHA0251 7 Location: 35380-35689 bp Feature: gene Location: 35762-36166 bp Ori: EQQ53496.1 Feature: domain Description: InsE Location: 35792-36128 bp Feature: domain Description: InsE Location: 35792-361 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388)

Seq: KE699742.1 Escherichia coli HVH 106 (4-6881831) genomic scaffold acXuP-supercont1.4, whole genome shotgun sequence (3735794 bp)
Overview 1 RT 1: 1676792-1684687 bp Neighborhood of RT #1 [1676792, 1684687] IS5 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 1676792-1677772 bp Ori: EQQ59371.1 Feature: domain Description: IS5 Location: 1676981-1677758 bp Feature: domain Description: IS5 Location: 1676981-1677758 bp Feature: gene Location: 1679453-1681699 bp Ori: EQQ59372.1 Feature: domain Description: AAA_15 Location: 1679456-1680464 bp Feature: domain Description: AAA_15 Location: 1679456-1680464 bp Feature: gene Location: 1681814-1682914 bp Ori: EQQ59373.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1681994-1682528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1681994-1682 52 8 bp Feature: gene Location: 1683570-1684439 bp Ori: EQQ59374.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1684092-1684263 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1684092 -16842 63 bp Feature: gene Location: 1684436-1684687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: KE699740.1 Escherichia coli HVH 106 (4-6881831) genomic scaffold acXuP-supercont1.2, whole genome shotgun sequence (127331 bp)
Overview 1 RT 1: 36240-42459 bp Neighborhood of RT #1 [36240, 42459] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 36240-37202 bp Feature: gene Location: 37515-38471 bp Ori: EQQ60667.1 Feature: domain Description: YhhI Location: 37518-37863 bp Feature: domain Description: YhhI Location: 3 7518-3 7863 bp Feature: domain Description: YhhI Location: 37920-38274 bp Feature: domain Description: YhhI Location: 3 7920-3 8274 bp Feature: domain Description: YhhI Location: 38274-38454 bp Feature: domain Description: YhhI Location: 3 8274-3 8454 bp Feature: gene Location: 39003-40253 bp Ori: EQQ60668.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39207-39864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9207-3 9864 bp Feature: domain Description: GIIM Note: maturase Location: 39945-40167 bp Feature: domain Description: GIIM Note: maturase Location: 3 9945-40167 bp Feature: gene Location: 40700-41836 bp Ori: EQQ60669.1 Feature: domain Description: YhhI Location: 40703-41066 bp Feature: domain Description: YhhI Location: 40703 -41066 bp Feature: domain Description: YhhI Location: 41123-41477 bp Feature: domain Description: YhhI Location: 41123 -41477 bp Feature: domain Description: YhhI Location: 41495-41738 bp Feature: domain Description: YhhI Location: 41495-4173 8 bp Feature: gene Location: 41956-42459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)