myRT

myRT report for GCA_000457675.1_Esch_coli_HVH_116_4-6879942_V1

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Seq: KE699886.1 Escherichia coli HVH 116 (4-6879942) genomic scaffold acYxR-supercont1.11, whole genome shotgun sequence (147597 bp)
Overview 1 RT 1: 13775-17857 bp 2 RT 2: 35877-39879 bp 3 RT 3: 144056-147597 bp Neighborhood of RT #1 [13775, 17862] InsE PHA02517 RVT-GII GIIM Tra5 InsE Neighborhood of RT #2 [35877, 39932] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Neighborhood of RT #3 [144056, 147597] PRK09413 PHA02517 RVT-GII GIIM Feature: gene Location: 13775-14005 bp Feature: domain Description: InsE Location: 13778-14003 bp Feature: domain Description: InsE Location: 1 3778-1 4003 bp Feature: gene Location: 14005-14484 bp Feature: domain Description: PHA02517 Location: 14065-14419 bp Feature: domain Description: PHA0251 7 Location: 1 4065-1 441 9 bp Feature: gene Location: 15076-16599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15349-16081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5349-1 6081 bp Feature: domain Description: GIIM Note: maturase Location: 16159-16354 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 59-1 6354 bp Feature: gene Location: 16919-17566 bp Feature: domain Description: Tra5 Location: 17030-17540 bp Feature: domain Description: Tra5 Location: 1 7030-1 7540 bp Feature: gene Location: 17563-17862 bp Feature: domain Description: InsE Location: 17590-17857 bp Feature: domain Description: InsE Location: 1 7590-1 7857 bp Feature: gene Location: 35877-36203 bp Feature: domain Description: InsE Location: 35880-36201 bp Feature: domain Description: InsE Location: 35880-36201 bp Feature: gene Location: 36203-36682 bp Feature: domain Description: PHA02517 Location: 36263-36617 bp Feature: domain Description: PHA0251 7 Location: 36263-3661 7 bp Feature: gene Location: 37274-38797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37547-38279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37547-38279 bp Feature: domain Description: GIIM Note: maturase Location: 38354-38552 bp Feature: domain Description: GIIM Note: maturase Location: 38354-38552 bp Feature: gene Location: 38914-39360 bp Feature: domain Description: PHA02517 Location: 38917-39358 bp Feature: domain Description: PHA0251 7 Location: 3891 7-39358 bp Feature: gene Location: 39363-39932 bp Feature: domain Description: autotrans_barl Location: 39444-39879 bp Feature: domain Description: autotrans_barl Location: 39444-39879 bp Feature: gene Location: 144056-144421 bp Feature: domain Description: PRK09413 Location: 144059-144419 bp Feature: domain Description: PRK0941 3 Location: 1 44059-1 4441 9 bp Feature: gene Location: 144511-144957 bp Feature: domain Description: PHA02517 Location: 144514-144955 bp Feature: domain Description: PHA0251 7 Location: 1 4451 4-1 44955 bp Feature: gene Location: 145074-146597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145347-146079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45347-1 46079 bp Feature: domain Description: GIIM Note: maturase Location: 146157-146352 bp Feature: domain Description: GIIM Note: maturase Location: 1 461 57-1 46352 bp Feature: gene Location: 147189-147597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), autotrans_barl (TIGR01414), PRK09413 (IS2 repressor TnpA; Reviewed)