myRT

myRT report for GCA_000458155.1_Esch_coli_HVH_145_4-5672112_V1

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Seq: KE700230.1 Escherichia coli HVH 145 (4-5672112) genomic scaffold acYxw-supercont1.1, whole genome shotgun sequence (4730439 bp)
Overview 1 RT 1: 2417172-2424789 bp 2 RT 2: 4455945-4462164 bp Neighborhood of RT #1 [2417172, 2424824] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #2 [4455945, 4462164] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 2417172-2417423 bp Feature: gene Location: 2417795-2418289 bp Ori: EQS25621.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2417939-2418113 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 241 7939-241 81 1 3 bp Feature: gene Location: 2418945-2420045 bp Ori: EQS25622.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2419125-2419659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241 91 25-241 9659 bp Feature: gene Location: 2420160-2422406 bp Ori: EQS25623.1 Feature: domain Description: AAA_15 Location: 2420163-2421171 bp Feature: domain Description: AAA_1 5 Location: 24201 63-2421 1 71 bp Feature: gene Location: 2423805-2424824 bp Ori: EQS25624.1 Feature: domain Description: DUF4917 Location: 2423865-2424789 bp Feature: domain Description: DUF491 7 Location: 2423865-2424789 bp Feature: gene Location: 4455945-4456448 bp Feature: gene Location: 4456568-4457704 bp Ori: EQS21272.1 Feature: domain Description: YhhI Location: 4456571-4456934 bp Feature: domain Description: YhhI Location: 4456571 -4456934 bp Feature: domain Description: YhhI Location: 4456991-4457345 bp Feature: domain Description: YhhI Location: 4456991 -4457345 bp Feature: domain Description: YhhI Location: 4457363-4457606 bp Feature: domain Description: YhhI Location: 4457363-4457606 bp Feature: gene Location: 4458151-4459401 bp Ori: EQS21273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458355-4459012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458355-445901 2 bp Feature: domain Description: GIIM Note: maturase Location: 4459093-4459315 bp Feature: domain Description: GIIM Note: maturase Location: 4459093-445931 5 bp Feature: gene Location: 4459933-4460889 bp Ori: EQS21274.1 Feature: domain Description: YhhI Location: 4459936-4460281 bp Feature: domain Description: YhhI Location: 4459936-4460281 bp Feature: domain Description: YhhI Location: 4460338-4460692 bp Feature: domain Description: YhhI Location: 4460338-4460692 bp Feature: domain Description: YhhI Location: 4460692-4460872 bp Feature: domain Description: YhhI Location: 4460692-4460872 bp Feature: gene Location: 4461202-4462164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: KE700233.1 Escherichia coli HVH 145 (4-5672112) genomic scaffold acYxw-supercont1.4, whole genome shotgun sequence (125046 bp)
Overview 1 RT 1: 10521-13202 bp 2 RT 2: 23541-27329 bp Neighborhood of RT #1 [10521, 13204] PRK10173 PRK10173 RVT-GII PHA02517 InsE Neighborhood of RT #2 [23541, 27367] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 10521-10970 bp Ori: EQS19091.1 Feature: domain Description: PRK10173 Location: 10524-10962 bp Feature: domain Description: PRK10173 Location: 1052 4-10962 bp Feature: gene Location: 10945-11265 bp Ori: EQS19092.1 Feature: domain Description: PRK10173 Location: 10948-11176 bp Feature: domain Description: PRK10173 Location: 10948-11176 bp Feature: gene Location: 11304-11807 bp Ori: EQS19093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11577-11646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11577-11646 bp Feature: gene Location: 12399-12878 bp Ori: EQS19094.1 Feature: domain Description: PHA02517 Location: 12459-12813 bp Feature: domain Description: PHA02 517 Location: 12 459-12 813 bp Feature: gene Location: 12878-13204 bp Ori: EQS19095.1 Feature: domain Description: InsE Location: 12881-13202 bp Feature: domain Description: InsE Location: 12 881-132 02 bp Feature: gene Location: 23541-23867 bp Ori: EQS19108.1 Feature: domain Description: InsE Location: 23544-23865 bp Feature: domain Description: InsE Location: 2 3544-2 3865 bp Feature: gene Location: 23867-24346 bp Ori: EQS19109.1 Feature: domain Description: PHA02517 Location: 23927-24281 bp Feature: domain Description: PHA02 517 Location: 2 392 7-2 42 81 bp Feature: gene Location: 24938-26461 bp Ori: EQS19110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25211-25943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 11-2 5943 bp Feature: domain Description: GIIM Note: maturase Location: 26018-26216 bp Feature: domain Description: GIIM Note: maturase Location: 2 6018-2 62 16 bp Feature: gene Location: 26578-26934 bp Ori: EQS19111.1 Feature: domain Description: PHA02517 Location: 26581-26890 bp Feature: domain Description: PHA02 517 Location: 2 6581-2 6890 bp Feature: gene Location: 26963-27367 bp Ori: EQS19112.1 Feature: domain Description: InsE Location: 26993-27329 bp Feature: domain Description: InsE Location: 2 6993-2 732 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388)