myRT

myRT report for GCA_000458625.1_Esch_coli_HVH_173_3-9175482_V1

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Seq: KE700545.1 Escherichia coli HVH 173 (3-9175482) genomic scaffold acXud-supercont1.5, whole genome shotgun sequence (80135 bp)
Overview 1 RT 1: 1-3238 bp Neighborhood of RT #1 [1, 3276] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-255 bp Ori: EQT05889.1 Feature: domain Description: PHA02517 Location: 4-190 bp Feature: domain Description: PHA0251 7 Location: 4-1 90 bp Feature: gene Location: 847-2370 bp Ori: EQT05890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 20-1 852 bp Feature: domain Description: GIIM Note: maturase Location: 1927-2125 bp Feature: domain Description: GIIM Note: maturase Location: 1 927-21 25 bp Feature: gene Location: 2487-2843 bp Ori: EQT05891.1 Feature: domain Description: PHA02517 Location: 2490-2799 bp Feature: domain Description: PHA0251 7 Location: 2490-2799 bp Feature: gene Location: 2872-3276 bp Ori: EQT05892.1 Feature: domain Description: InsE Location: 2902-3238 bp Feature: domain Description: InsE Location: 2902-3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: KE700544.1 Escherichia coli HVH 173 (3-9175482) genomic scaffold acXud-supercont1.4, whole genome shotgun sequence (59888 bp)
Overview 1 RT 1: 1-1724 bp 2 RT 2: 12063-14738 bp Neighborhood of RT #1 [1, 1726] RVT-GII PHA02517 InsE Neighborhood of RT #2 [12063, 14746] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-329 bp Ori: EQT06090.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 74-32 8 bp Feature: gene Location: 921-1400 bp Ori: EQT06091.1 Feature: domain Description: PHA02517 Location: 981-1335 bp Feature: domain Description: PHA02 517 Location: 981-1335 bp Feature: gene Location: 1400-1726 bp Ori: EQT06092.1 Feature: domain Description: InsE Location: 1403-1724 bp Feature: domain Description: InsE Location: 1403-172 4 bp Feature: gene Location: 12063-12389 bp Ori: EQT06105.1 Feature: domain Description: InsE Location: 12066-12387 bp Feature: domain Description: InsE Location: 12 066-12 387 bp Feature: gene Location: 12389-12868 bp Ori: EQT06106.1 Feature: domain Description: PHA02517 Location: 12449-12803 bp Feature: domain Description: PHA02 517 Location: 12 449-12 803 bp Feature: gene Location: 13460-13963 bp Ori: EQT06107.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13733-13802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13733-13802 bp Feature: gene Location: 14002-14322 bp Ori: EQT06108.1 Feature: domain Description: PRK10173 Location: 14005-14233 bp Feature: domain Description: PRK10173 Location: 14005-142 33 bp Feature: gene Location: 14297-14746 bp Ori: EQT06109.1 Feature: domain Description: PRK10173 Location: 14300-14738 bp Feature: domain Description: PRK10173 Location: 14300-14738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: KE700541.1 Escherichia coli HVH 173 (3-9175482) genomic scaffold acXud-supercont1.1, whole genome shotgun sequence (4943808 bp)
Overview 1 RT 1: 2610130-2617747 bp 2 RT 2: 4669331-4675266 bp Neighborhood of RT #1 [2610130, 2617782] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #2 [4669331, 4675266] RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 2610130-2610381 bp Feature: gene Location: 2610378-2611247 bp Ori: EQT11724.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2610900-2611071 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2610900-2611071 bp Feature: gene Location: 2611903-2613003 bp Ori: EQT11725.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2612083-2612617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2612083 -2612617 bp Feature: gene Location: 2613118-2615364 bp Ori: EQT11726.1 Feature: domain Description: AAA_15 Location: 2613121-2614129 bp Feature: domain Description: AAA_15 Location: 2613 121-2614129 bp Feature: gene Location: 2616763-2617782 bp Ori: EQT11727.1 Feature: domain Description: DUF4917 Location: 2616823-2617747 bp Feature: domain Description: DUF4917 Location: 2616823 -2617747 bp Feature: gene Location: 4669331-4669834 bp Feature: gene Location: 4669954-4670230 bp Feature: gene Location: 4671253-4672503 bp Ori: EQT06990.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4671457-4672114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4671457-4672114 bp Feature: domain Description: GIIM Note: maturase Location: 4672195-4672417 bp Feature: domain Description: GIIM Note: maturase Location: 4672195-4672417 bp Feature: gene Location: 4673035-4673991 bp Ori: EQT06991.1 Feature: domain Description: YhhI Location: 4673038-4673383 bp Feature: domain Description: YhhI Location: 4673 03 8-4673 3 83 bp Feature: domain Description: YhhI Location: 4673440-4673794 bp Feature: domain Description: YhhI Location: 4673 440-4673 794 bp Feature: domain Description: YhhI Location: 4673794-4673974 bp Feature: domain Description: YhhI Location: 4673 794-4673 974 bp Feature: gene Location: 4674304-4675266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), RVT-GII, GIIM (pfam08388), YhhI (COG5433)