myRT

myRT report for GCA_000458765.1_Esch_coli_HVH_185_4-2876639_V1

Download annotations/find similar RTs

Seq: KE700651.1 Escherichia coli HVH 185 (4-2876639) genomic scaffold acXuK-supercont1.2, whole genome shotgun sequence (1670266 bp)
Overview 1 RT 1: 1378407-1382931 bp Neighborhood of RT #1 [1378407, 1383080] HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 1378407-1378793 bp Feature: gene Location: 1378869-1379768 bp Ori: EQT48984.1 Feature: domain Description: HTH_33 Location: 1379031-1379193 bp Feature: domain Description: HTH_33 Location: 1 379031 -1 3791 93 bp Feature: domain Description: DDE_3 Location: 1379235-1379664 bp Feature: domain Description: DDE_3 Location: 1 379235-1 379664 bp Feature: gene Location: 1379870-1381240 bp Ori: EQT48985.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1380131-1380587 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 3801 31 -1 380587 bp Feature: gene Location: 1381279-1382058 bp Ori: EQT48986.1 Feature: domain Description: PRK09183 Location: 1381285-1382056 bp Feature: domain Description: PRK091 83 Location: 1 381 285-1 382056 bp Feature: gene Location: 1382058-1383080 bp Ori: EQT48987.1 Feature: domain Description: COG4584 Location: 1382061-1382931 bp Feature: domain Description: COG4584 Location: 1 382061 -1 382931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: KE700652.1 Escherichia coli HVH 185 (4-2876639) genomic scaffold acXuK-supercont1.3, whole genome shotgun sequence (908584 bp)
Overview 1 RT 1: 862435-867165 bp Neighborhood of RT #1 [862435, 867165] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM rve Feature: gene Location: 862435-862782 bp Ori: EQT46884.1 Feature: domain Description: TnpB_IS66 Location: 862462-862753 bp Feature: domain Description: TnpB_IS66 Location: 862 462 -862 753 bp Feature: gene Location: 862802-864241 bp Ori: EQT46885.1 Feature: domain Description: LZ_Tnp_IS66 Location: 862940-863165 bp Feature: domain Description: LZ_Tnp_IS66 Location: 862 940-863165 bp Feature: domain Description: zf-IS66 Location: 863186-863318 bp Feature: domain Description: zf-IS66 Location: 863186-863318 bp Feature: domain Description: DDE_Tnp_IS66 Location: 863363-864200 bp Feature: domain Description: DDE_Tnp_IS66 Location: 863363-8642 00 bp Feature: gene Location: 864703-865935 bp Ori: EQT46886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864904-865558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864904-865558 bp Feature: domain Description: GIIM Note: maturase Location: 865636-865858 bp Feature: domain Description: GIIM Note: maturase Location: 865636-865858 bp Feature: gene Location: 866273-866965 bp Ori: EQT46887.1 Feature: domain Description: rve Location: 866408-866774 bp Feature: domain Description: rve Location: 866408-866774 bp Feature: gene Location: 866989-867165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), rve (pfam00665)