myRT

myRT report for GCA_000459615.1_Esch_coli_KOEGE_30_63a_V1

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Seq: KE701230.1 Escherichia coli KOEGE 30 (63a) genomic scaffold acYAs-supercont1.3, whole genome shotgun sequence (391271 bp)
Overview 1 RT 1: 98834-102933 bp Neighborhood of RT #1 [98834, 102933] HTH_33 DDE_3 RVT-AbiP2 PRK09183 Feature: gene Location: 98834-99220 bp Feature: gene Location: 99296-100195 bp Ori: EQV31707.1 Feature: domain Description: HTH_33 Location: 99458-99620 bp Feature: domain Description: HTH_33 Location: 99458-99620 bp Feature: domain Description: DDE_3 Location: 99662-100091 bp Feature: domain Description: DDE_3 Location: 99662-1 00091 bp Feature: gene Location: 100297-101667 bp Ori: EQV31708.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100558-101014 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 00558-1 01 01 4 bp Feature: gene Location: 101706-102485 bp Ori: EQV31709.1 Feature: domain Description: PRK09183 Location: 101712-102483 bp Feature: domain Description: PRK091 83 Location: 1 01 71 2-1 02483 bp Feature: gene Location: 102485-102933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional)

Seq: KE701233.1 Escherichia coli KOEGE 30 (63a) genomic scaffold acYAs-supercont1.6, whole genome shotgun sequence (460096 bp)
Overview 1 RT 1: 193608-202928 bp 2 RT 2: 222335-228075 bp Neighborhood of RT #1 [193608, 202936] YcaC_related RVT-GII GIIM RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66 TnpB_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix PRK09413 Neighborhood of RT #2 [222335, 228233] InsG Transposase_20 RVT-GII GIIM YcaC_related Feature: gene Location: 193608-193718 bp Feature: gene Location: 193691-193996 bp Ori: EQV28733.1 Feature: domain Description: YcaC_related Location: 193709-193991 bp Feature: domain Description: YcaC_related Location: 193709-193991 bp Feature: gene Location: 194286-194813 bp Ori: EQV28734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194292-194436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942 92 -194436 bp Feature: domain Description: GIIM Note: maturase Location: 194514-194736 bp Feature: domain Description: GIIM Note: maturase Location: 194514-194736 bp Feature: gene Location: 194806-195516 bp Ori: EQV28735.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195007-195508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195007-195508 bp Feature: gene Location: 195968-196216 bp Ori: EQV28736.1 Feature: domain Description: DDE_Tnp_IS66 Location: 195971-196175 bp Feature: domain Description: DDE_Tnp_IS66 Location: 195971-196175 bp Feature: gene Location: 196200-196385 bp Ori: EQV28737.1 Feature: domain Description: DDE_Tnp_IS66 Location: 196203-196365 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1962 03-196365 bp Feature: gene Location: 197429-197776 bp Ori: EQV28739.1 Feature: domain Description: TnpB_IS66 Location: 197456-197747 bp Feature: domain Description: TnpB_IS66 Location: 197456-197747 bp Feature: gene Location: 197776-198426 bp Ori: EQV28740.1 Feature: domain Description: HTH_23 Location: 197827-197926 bp Feature: domain Description: HTH_2 3 Location: 19782 7-19792 6 bp Feature: domain Description: InsE Location: 198052-198403 bp Feature: domain Description: InsE Location: 198052 -198403 bp Feature: gene Location: 199408-199782 bp Ori: EQV28741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199414-199585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199414-199585 bp Feature: gene Location: 199798-200610 bp Ori: EQV28742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200071-200527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 00071-2 0052 7 bp Feature: gene Location: 201221-202426 bp Ori: EQV28743.1 Feature: domain Description: FHA_bHelix Location: 201239-201473 bp Feature: domain Description: FHA_bHelix Location: 2 012 39-2 01473 bp Feature: domain Description: fil_hemag_20aa Location: 201473-201593 bp Feature: domain Description: fil_hemag_2 0aa Location: 2 01473-2 01593 bp Feature: domain Description: FHA_bHelix Location: 201704-202067 bp Feature: domain Description: FHA_bHelix Location: 2 01704-2 02 067 bp Feature: domain Description: FHA_bHelix Location: 202289-202397 bp Feature: domain Description: FHA_bHelix Location: 2 02 2 89-2 02 397 bp Feature: gene Location: 202763-202936 bp Ori: EQV28744.1 Feature: domain Description: PRK09413 Location: 202766-202928 bp Feature: domain Description: PRK09413 Location: 2 02 766-2 02 92 8 bp Feature: gene Location: 222335-222514 bp Feature: gene Location: 222511-223902 bp Ori: EQV28763.1 Feature: domain Description: InsG Location: 222514-223435 bp Feature: domain Description: InsG Location: 2 2 2 514-2 2 3435 bp Feature: domain Description: Transposase_20 Location: 223558-223804 bp Feature: domain Description: Transposase_2 0 Location: 2 2 3558-2 2 3804 bp Feature: gene Location: 224289-225677 bp Ori: EQV28764.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224619-225237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 4619-2 2 52 37 bp Feature: domain Description: GIIM Note: maturase Location: 225285-225516 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 52 85-2 2 5516 bp Feature: gene Location: 226605-227216 bp Feature: gene Location: 227553-228233 bp Ori: EQV28766.1 Feature: domain Description: YcaC_related Location: 227598-228075 bp Feature: domain Description: YcaC_related Location: 2 2 7598-2 2 8075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaC_related (cd01012), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), PRK09413 (IS2 repressor TnpA; Reviewed)
InsG (COG3385), Transposase_20 (pfam02371)