myRT

myRT report for GCA_000459755.1_Esch_coli_KOEGE_58_171a_V1

Download annotations/find similar RTs

Seq: KE701334.1 Escherichia coli KOEGE 58 (171a) genomic scaffold acYAA-supercont1.3, whole genome shotgun sequence (890331 bp)
Overview 1 RT 1: 844063-848793 bp Neighborhood of RT #1 [844063, 848793] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM rve Feature: gene Location: 844063-844410 bp Ori: EQV64769.1 Feature: domain Description: TnpB_IS66 Location: 844090-844381 bp Feature: domain Description: TnpB_IS66 Location: 844090-844381 bp Feature: gene Location: 844430-845869 bp Ori: EQV64770.1 Feature: domain Description: LZ_Tnp_IS66 Location: 844568-844793 bp Feature: domain Description: LZ_Tnp_IS66 Location: 844568-844793 bp Feature: domain Description: zf-IS66 Location: 844814-844946 bp Feature: domain Description: zf-IS66 Location: 84481 4-844946 bp Feature: domain Description: DDE_Tnp_IS66 Location: 844991-845828 bp Feature: domain Description: DDE_Tnp_IS66 Location: 844991 -845828 bp Feature: gene Location: 846331-847563 bp Ori: EQV64771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846532-847186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846532-8471 86 bp Feature: domain Description: GIIM Note: maturase Location: 847264-847486 bp Feature: domain Description: GIIM Note: maturase Location: 847264-847486 bp Feature: gene Location: 847901-848593 bp Ori: EQV64772.1 Feature: domain Description: rve Location: 848036-848402 bp Feature: domain Description: rve Location: 848036-848402 bp Feature: gene Location: 848617-848793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), rve (pfam00665)

Seq: KE701333.1 Escherichia coli KOEGE 58 (171a) genomic scaffold acYAA-supercont1.2, whole genome shotgun sequence (1935078 bp)
Overview 1 RT 1: 1634662-1639186 bp Neighborhood of RT #1 [1634662, 1639335] HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 1634662-1635048 bp Feature: gene Location: 1635124-1636023 bp Ori: EQV68013.1 Feature: domain Description: HTH_33 Location: 1635286-1635448 bp Feature: domain Description: HTH_33 Location: 16352 86-1635448 bp Feature: domain Description: DDE_3 Location: 1635490-1635919 bp Feature: domain Description: DDE_3 Location: 1635490-1635919 bp Feature: gene Location: 1636125-1637495 bp Ori: EQV68014.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1636386-1636842 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1636386-1636842 bp Feature: gene Location: 1637534-1638313 bp Ori: EQV68015.1 Feature: domain Description: PRK09183 Location: 1637540-1638311 bp Feature: domain Description: PRK09183 Location: 1637540-1638311 bp Feature: gene Location: 1638313-1639335 bp Ori: EQV68016.1 Feature: domain Description: COG4584 Location: 1638316-1639186 bp Feature: domain Description: COG4584 Location: 1638316-1639186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )