myRT

myRT report for GCA_000459795.1_Esch_coli_KOEGE_62_175a_V1

Download annotations/find similar RTs

Seq: KE701350.1 Escherichia coli KOEGE 62 (175a) genomic scaffold acYzP-supercont1.1, whole genome shotgun sequence (3099191 bp)
Overview 1 RT 1: 267105-273324 bp 2 RT 2: 2389515-2397167 bp Neighborhood of RT #1 [267105, 273324] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #2 [2389515, 2397167] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 267105-268067 bp Feature: gene Location: 268380-269336 bp Ori: EQV88213.1 Feature: domain Description: YhhI Location: 268383-268728 bp Feature: domain Description: YhhI Location: 268383-268728 bp Feature: domain Description: YhhI Location: 268785-269139 bp Feature: domain Description: YhhI Location: 268785-2691 39 bp Feature: domain Description: YhhI Location: 269139-269319 bp Feature: domain Description: YhhI Location: 2691 39-26931 9 bp Feature: gene Location: 269868-271118 bp Ori: EQV88214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270072-270729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270072-270729 bp Feature: domain Description: GIIM Note: maturase Location: 270810-271032 bp Feature: domain Description: GIIM Note: maturase Location: 27081 0-271 032 bp Feature: gene Location: 271565-272701 bp Ori: EQV88215.1 Feature: domain Description: YhhI Location: 271568-271931 bp Feature: domain Description: YhhI Location: 271 568-271 931 bp Feature: domain Description: YhhI Location: 271988-272342 bp Feature: domain Description: YhhI Location: 271 988-272342 bp Feature: domain Description: YhhI Location: 272360-272603 bp Feature: domain Description: YhhI Location: 272360-272603 bp Feature: gene Location: 272821-273324 bp Feature: gene Location: 2389515-2390534 bp Ori: EQV87204.1 Feature: domain Description: DUF4917 Location: 2389575-2390499 bp Feature: domain Description: DUF491 7 Location: 2389575-2390499 bp Feature: gene Location: 2391933-2394179 bp Ori: EQV87205.1 Feature: domain Description: AAA_15 Location: 2391936-2392944 bp Feature: domain Description: AAA_1 5 Location: 2391 936-2392944 bp Feature: gene Location: 2394294-2395394 bp Ori: EQV87206.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2394474-2395008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2394474-2395008 bp Feature: gene Location: 2396050-2396919 bp Ori: EQV87207.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2396572-2396743 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2396572-2396743 bp Feature: gene Location: 2396916-2397167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: KE701353.1 Escherichia coli KOEGE 62 (175a) genomic scaffold acYzP-supercont1.4, whole genome shotgun sequence (196348 bp)
Overview 1 RT 1: 123496-127320 bp 2 RT 2: 137659-140334 bp Neighborhood of RT #1 [123496, 127322] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [137659, 140342] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 123496-123900 bp Ori: EQV75071.1 Feature: domain Description: InsE Location: 123526-123862 bp Feature: domain Description: InsE Location: 12 352 6-12 3862 bp Feature: gene Location: 123929-124285 bp Ori: EQV75072.1 Feature: domain Description: PHA02517 Location: 123932-124241 bp Feature: domain Description: PHA02 517 Location: 12 3932 -12 42 41 bp Feature: gene Location: 124402-125925 bp Ori: EQV75073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124675-125407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4675-12 5407 bp Feature: domain Description: GIIM Note: maturase Location: 125482-125680 bp Feature: domain Description: GIIM Note: maturase Location: 12 5482 -12 5680 bp Feature: gene Location: 126517-126996 bp Ori: EQV75074.1 Feature: domain Description: PHA02517 Location: 126577-126931 bp Feature: domain Description: PHA02 517 Location: 12 6577-12 6931 bp Feature: gene Location: 126996-127322 bp Ori: EQV75075.1 Feature: domain Description: InsE Location: 126999-127320 bp Feature: domain Description: InsE Location: 12 6999-12 732 0 bp Feature: gene Location: 137659-137985 bp Ori: EQV75088.1 Feature: domain Description: InsE Location: 137662-137983 bp Feature: domain Description: InsE Location: 137662 -137983 bp Feature: gene Location: 137985-138464 bp Ori: EQV75089.1 Feature: domain Description: PHA02517 Location: 138045-138399 bp Feature: domain Description: PHA02 517 Location: 138045-138399 bp Feature: gene Location: 139056-139559 bp Ori: EQV75090.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139329-139398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13932 9-139398 bp Feature: gene Location: 139598-139918 bp Ori: EQV75091.1 Feature: domain Description: PRK10173 Location: 139601-139829 bp Feature: domain Description: PRK10173 Location: 139601-13982 9 bp Feature: gene Location: 139893-140342 bp Ori: EQV75092.1 Feature: domain Description: PRK10173 Location: 139896-140334 bp Feature: domain Description: PRK10173 Location: 139896-140334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)