myRT

myRT report for GCA_000459955.1_Esch_coli_UMEA_3014-1_V1

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Seq: KE701429.1 Escherichia coli UMEA 3014-1 genomic scaffold acYxL-supercont1.4, whole genome shotgun sequence (745744 bp)
Overview 1 RT 1: 428464-432795 bp 2 RT 2: 470147-476045 bp 3 RT 3: 495440-504481 bp Neighborhood of RT #1 [428464, 432845] fecB RVT-GII COG3547 COG3547 Neighborhood of RT #2 [470147, 476045] YcaC_related RVT-GII GIIM InsG Transposase_20 Neighborhood of RT #3 [495440, 504481] PRK09413 FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix RVT-GII RVT-GII HTH_23 InsE TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII RVT-GII GIIM YcaC_related Feature: gene Location: 428464-428763 bp Feature: gene Location: 428882-429322 bp Ori: EQW14161.1 Feature: domain Description: fecB Location: 428885-429311 bp Feature: domain Description: fecB Location: 428885-42931 1 bp Feature: gene Location: 430270-431604 bp Ori: EQW14162.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430555-431242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430555-431 242 bp Feature: gene Location: 431843-432238 bp Ori: EQW14163.1 Feature: domain Description: COG3547 Location: 431861-432152 bp Feature: domain Description: COG3547 Location: 431 861 -4321 52 bp Feature: gene Location: 432204-432845 bp Ori: EQW14164.1 Feature: domain Description: COG3547 Location: 432213-432795 bp Feature: domain Description: COG3547 Location: 43221 3-432795 bp Feature: gene Location: 470147-470827 bp Ori: EQW14201.1 Feature: domain Description: YcaC_related Location: 470192-470669 bp Feature: domain Description: YcaC_related Location: 4701 92-470669 bp Feature: gene Location: 471164-471775 bp Feature: gene Location: 472703-474091 bp Ori: EQW14203.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473033-473651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473033-473651 bp Feature: domain Description: GIIM Note: maturase Location: 473699-473930 bp Feature: domain Description: GIIM Note: maturase Location: 473699-473930 bp Feature: gene Location: 474478-475869 bp Ori: EQW14204.1 Feature: domain Description: InsG Location: 474481-475402 bp Feature: domain Description: InsG Location: 474481 -475402 bp Feature: domain Description: Transposase_20 Location: 475525-475771 bp Feature: domain Description: Transposase_20 Location: 475525-475771 bp Feature: gene Location: 475866-476045 bp Feature: gene Location: 495440-495613 bp Ori: EQW14224.1 Feature: domain Description: PRK09413 Location: 495443-495605 bp Feature: domain Description: PRK0941 3 Location: 495443-495605 bp Feature: gene Location: 495950-497155 bp Ori: EQW14225.1 Feature: domain Description: FHA_bHelix Location: 495968-496196 bp Feature: domain Description: FHA_bHelix Location: 495968-4961 96 bp Feature: domain Description: fil_hemag_20aa Location: 496199-496259 bp Feature: domain Description: fil_hemag_20aa Location: 4961 99-496259 bp Feature: domain Description: FHA_bHelix Location: 496433-496808 bp Feature: domain Description: FHA_bHelix Location: 496433-496808 bp Feature: domain Description: FHA_bHelix Location: 497018-497126 bp Feature: domain Description: FHA_bHelix Location: 49701 8-4971 26 bp Feature: gene Location: 497766-498578 bp Ori: EQW14226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498039-498495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498039-498495 bp Feature: gene Location: 498594-498968 bp Ori: EQW14227.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498600-498771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498600-498771 bp Feature: gene Location: 499708-499953 bp Feature: gene Location: 499950-500600 bp Ori: EQW14229.1 Feature: domain Description: HTH_23 Location: 500001-500100 bp Feature: domain Description: HTH_23 Location: 500001 -5001 00 bp Feature: domain Description: InsE Location: 500226-500577 bp Feature: domain Description: InsE Location: 500226-500577 bp Feature: gene Location: 500600-500947 bp Ori: EQW14230.1 Feature: domain Description: TnpB_IS66 Location: 500627-500918 bp Feature: domain Description: TnpB_IS66 Location: 500627-50091 8 bp Feature: gene Location: 500967-502538 bp Ori: EQW14231.1 Feature: domain Description: LZ_Tnp_IS66 Location: 501105-501330 bp Feature: domain Description: LZ_Tnp_IS66 Location: 501 1 05-501 330 bp Feature: domain Description: zf-IS66 Location: 501351-501483 bp Feature: domain Description: zf-IS66 Location: 501 351 -501 483 bp Feature: domain Description: DDE_Tnp_IS66 Location: 501528-502383 bp Feature: domain Description: DDE_Tnp_IS66 Location: 501 528-502383 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 502404-502515 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 502404-50251 5 bp Feature: gene Location: 502573-503283 bp Ori: EQW14232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502774-503275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502774-503275 bp Feature: gene Location: 503276-503803 bp Ori: EQW14233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503282-503426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503282-503426 bp Feature: domain Description: GIIM Note: maturase Location: 503504-503726 bp Feature: domain Description: GIIM Note: maturase Location: 503504-503726 bp Feature: gene Location: 504093-504398 bp Ori: EQW14234.1 Feature: domain Description: YcaC_related Location: 504111-504393 bp Feature: domain Description: YcaC_related Location: 5041 1 1 -504393 bp Feature: gene Location: 504371-504481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecB (PRK11411), RVT-GII, COG3547 (Transposase ), YcaC_related (cd01012), GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371), PRK09413 (IS2 repressor TnpA; Reviewed), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731)
HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)