myRT

myRT report for GCA_000459995.1_Esch_coli_UMEA_3033-1_V1

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Seq: KE701448.1 Escherichia coli UMEA 3033-1 genomic scaffold acYAi-supercont1.2, whole genome shotgun sequence (1050884 bp)
Overview 1 RT 1: 63218-69249 bp Neighborhood of RT #1 [63218, 69386] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 63218-63358 bp Ori: EQW32780.1 Feature: domain Description: SfsB Location: 63227-63299 bp Feature: domain Description: SfsB Location: 63227-63299 bp Feature: gene Location: 63355-63825 bp Feature: gene Location: 64172-67381 bp Ori: EQW32782.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 64700-65189 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 64700-651 89 bp Feature: domain Description: nitrilase Location: 66695-67292 bp Feature: domain Description: nitrilase Location: 66695-67292 bp Feature: gene Location: 67697-68479 bp Ori: EQW32783.1 Feature: domain Description: AbiEi_3_N Location: 67709-67970 bp Feature: domain Description: AbiEi_3_N Location: 67709-67970 bp Feature: domain Description: AbiEi_3 Location: 67982-68438 bp Feature: domain Description: AbiEi_3 Location: 67982-68438 bp Feature: gene Location: 68466-69386 bp Ori: EQW32784.1 Feature: domain Description: AbiEii Location: 68508-69249 bp Feature: domain Description: AbiEii Location: 68508-69249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: KE701449.1 Escherichia coli UMEA 3033-1 genomic scaffold acYAi-supercont1.3, whole genome shotgun sequence (1983403 bp)
Overview 1 RT 1: 405241-409986 bp 2 RT 2: 431928-437331 bp 3 RT 3: 1253273-1257220 bp Neighborhood of RT #1 [405241, 409986] InsE PHA02517 RVT-GII GIIM Neighborhood of RT #2 [431928, 437339] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [1253273, 1257222] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 405241-405591 bp Ori: EQW29515.1 Feature: domain Description: InsE Location: 405250-405538 bp Feature: domain Description: InsE Location: 4052 50-405538 bp Feature: gene Location: 405696-406067 bp Ori: EQW29516.1 Feature: domain Description: PHA02517 Location: 405699-406065 bp Feature: domain Description: PHA02 517 Location: 405699-406065 bp Feature: gene Location: 406259-407782 bp Ori: EQW29517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406532-407264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406532 -4072 64 bp Feature: domain Description: GIIM Note: maturase Location: 407339-407537 bp Feature: domain Description: GIIM Note: maturase Location: 407339-407537 bp Feature: gene Location: 408791-409615 bp Feature: gene Location: 409663-409986 bp Feature: gene Location: 431928-432845 bp Ori: EQW29543.1 Feature: domain Description: PFLE_PFLC Location: 431964-432819 bp Feature: domain Description: PFLE_PFLC Location: 431964-432 819 bp Feature: gene Location: 432982-433887 bp Feature: gene Location: 434373-434912 bp Ori: EQW29545.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434703-434781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434703-434781 bp Feature: gene Location: 434979-435461 bp Ori: EQW29546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434988-435228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434988-4352 2 8 bp Feature: domain Description: GIIM Note: maturase Location: 435276-435456 bp Feature: domain Description: GIIM Note: maturase Location: 4352 76-435456 bp Feature: gene Location: 435849-436037 bp Feature: gene Location: 436110-437339 bp Ori: EQW29548.1 Feature: domain Description: YesM Location: 436590-437331 bp Feature: domain Description: YesM Location: 436590-437331 bp Feature: gene Location: 1253273-1253755 bp Ori: EQW27041.1 Feature: domain Description: zinc_ribbon_11 Location: 1253372-1253690 bp Feature: domain Description: zinc_ribbon_11 Location: 12 53372 -12 53690 bp Feature: gene Location: 1253739-1254185 bp Ori: EQW27042.1 Feature: domain Description: PHA02517 Location: 1253742-1254183 bp Feature: domain Description: PHA02 517 Location: 12 53742 -12 54183 bp Feature: gene Location: 1254302-1255825 bp Ori: EQW27043.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254575-1255307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 54575-12 55307 bp Feature: domain Description: GIIM Note: maturase Location: 1255382-1255580 bp Feature: domain Description: GIIM Note: maturase Location: 12 55382 -12 55580 bp Feature: gene Location: 1256417-1256896 bp Ori: EQW27044.1 Feature: domain Description: PHA02517 Location: 1256477-1256831 bp Feature: domain Description: PHA02 517 Location: 12 56477-12 56831 bp Feature: gene Location: 1256896-1257222 bp Ori: EQW27045.1 Feature: domain Description: InsE Location: 1256899-1257220 bp Feature: domain Description: InsE Location: 12 56899-12 572 2 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), YesM (COG2972), zinc_ribbon_11 (pfam11682)

Seq: KE701446.1 Escherichia coli UMEA 3033-1 genomic scaffold acYAi-supercont1.10, whole genome shotgun sequence (146763 bp)
Overview 1 RT 1: 132056-136237 bp Neighborhood of RT #1 [132056, 136239] InsE Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 132056-132355 bp Ori: EQW18940.1 Feature: domain Description: InsE Location: 132083-132350 bp Feature: domain Description: InsE Location: 13 2083 -13 23 50 bp Feature: gene Location: 132352-132999 bp Ori: EQW18941.1 Feature: domain Description: Tra5 Location: 132463-132973 bp Feature: domain Description: Tra5 Location: 13 2463 -13 2973 bp Feature: gene Location: 133319-134842 bp Ori: EQW18942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133592-134324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 592-13 43 24 bp Feature: domain Description: GIIM Note: maturase Location: 134402-134597 bp Feature: domain Description: GIIM Note: maturase Location: 13 4402-13 4597 bp Feature: gene Location: 135434-135913 bp Ori: EQW18943.1 Feature: domain Description: PHA02517 Location: 135494-135848 bp Feature: domain Description: PHA02517 Location: 13 5494-13 5848 bp Feature: gene Location: 135913-136239 bp Ori: EQW18944.1 Feature: domain Description: InsE Location: 135916-136237 bp Feature: domain Description: InsE Location: 13 5916-13 623 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)