myRT

myRT report for GCA_000460175.1_Esch_coli_UMEA_3113-1_V1

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Seq: KE701576.1 Escherichia coli UMEA 3113-1 genomic scaffold acYzw-supercont1.5, whole genome shotgun sequence (895117 bp)
Overview 1 RT 1: 838289-843019 bp Neighborhood of RT #1 [838289, 843019] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM rve Feature: gene Location: 838289-838636 bp Ori: EQW63322.1 Feature: domain Description: TnpB_IS66 Location: 838316-838607 bp Feature: domain Description: TnpB_IS66 Location: 83831 6-838607 bp Feature: gene Location: 838656-840095 bp Ori: EQW63323.1 Feature: domain Description: LZ_Tnp_IS66 Location: 838794-839019 bp Feature: domain Description: LZ_Tnp_IS66 Location: 838794-83901 9 bp Feature: domain Description: zf-IS66 Location: 839040-839172 bp Feature: domain Description: zf-IS66 Location: 839040-8391 72 bp Feature: domain Description: DDE_Tnp_IS66 Location: 839217-840054 bp Feature: domain Description: DDE_Tnp_IS66 Location: 83921 7-840054 bp Feature: gene Location: 840557-841789 bp Ori: EQW63324.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840758-841412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840758-841 41 2 bp Feature: domain Description: GIIM Note: maturase Location: 841490-841712 bp Feature: domain Description: GIIM Note: maturase Location: 841 490-841 71 2 bp Feature: gene Location: 842127-842819 bp Ori: EQW63325.1 Feature: domain Description: rve Location: 842262-842628 bp Feature: domain Description: rve Location: 842262-842628 bp Feature: gene Location: 842843-843019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), rve (pfam00665)

Seq: KE701575.1 Escherichia coli UMEA 3113-1 genomic scaffold acYzw-supercont1.4, whole genome shotgun sequence (472253 bp)
Overview 1 RT 1: 102265-106789 bp Neighborhood of RT #1 [102265, 106938] HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 102265-102651 bp Feature: gene Location: 102727-103626 bp Ori: EQW67858.1 Feature: domain Description: HTH_33 Location: 102889-103051 bp Feature: domain Description: HTH_33 Location: 102 889-103051 bp Feature: domain Description: DDE_3 Location: 103093-103522 bp Feature: domain Description: DDE_3 Location: 103093-10352 2 bp Feature: gene Location: 103728-105098 bp Ori: EQW67859.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 103989-104445 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 103989-104445 bp Feature: gene Location: 105137-105916 bp Ori: EQW67860.1 Feature: domain Description: PRK09183 Location: 105143-105914 bp Feature: domain Description: PRK09183 Location: 105143-105914 bp Feature: gene Location: 105916-106938 bp Ori: EQW67861.1 Feature: domain Description: COG4584 Location: 105919-106789 bp Feature: domain Description: COG4584 Location: 105919-106789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )