myRT

myRT report for GCA_000460435.1_Esch_coli_UMEA_3160-1_V1

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Seq: KE701743.1 Escherichia coli UMEA 3160-1 genomic scaffold acYyl-supercont1.3, whole genome shotgun sequence (1324079 bp)
Overview 1 RT 1: 32552-40228 bp 2 RT 2: 1225782-1230113 bp 3 RT 3: 1276936-1282676 bp 4 RT 4: 1301083-1310411 bp Neighborhood of RT #1 [32552, 41361] Inovirus_Gp2 RVT-Retrons AAA_15 AAA_15 Neighborhood of RT #2 [1225782, 1230163] fecB RVT-GII COG3547 COG3547 Neighborhood of RT #3 [1276936, 1282834] InsG Transposase_20 RVT-GII GIIM YcaC_related Neighborhood of RT #4 [1301083, 1310411] PRK09413 FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix RVT-GII RVT-GII HTH_23 InsE TnpB_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM YcaC_related Feature: gene Location: 32552-33250 bp Ori: EQX19038.1 Feature: domain Description: Inovirus_Gp2 Location: 32663-33218 bp Feature: domain Description: Inovirus_Gp2 Location: 32663-3321 8 bp Feature: gene Location: 33661-37500 bp Feature: gene Location: 37971-39071 bp Ori: EQX19040.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38115-38676 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381 1 5-38676 bp Feature: gene Location: 39068-39247 bp Feature: gene Location: 39244-41361 bp Ori: EQX19042.1 Feature: domain Description: AAA_15 Location: 39247-39664 bp Feature: domain Description: AAA_1 5 Location: 39247-39664 bp Feature: domain Description: AAA_15 Location: 39802-40228 bp Feature: domain Description: AAA_1 5 Location: 39802-40228 bp Feature: gene Location: 1225782-1226081 bp Feature: gene Location: 1226200-1226640 bp Ori: EQX15987.1 Feature: domain Description: fecB Location: 1226203-1226629 bp Feature: domain Description: fecB Location: 1 226203-1 226629 bp Feature: gene Location: 1227588-1228922 bp Ori: EQX15988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1227873-1228560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 227873-1 228560 bp Feature: gene Location: 1229161-1229556 bp Ori: EQX15989.1 Feature: domain Description: COG3547 Location: 1229179-1229470 bp Feature: domain Description: COG3547 Location: 1 2291 79-1 229470 bp Feature: gene Location: 1229522-1230163 bp Ori: EQX15990.1 Feature: domain Description: COG3547 Location: 1229531-1230113 bp Feature: domain Description: COG3547 Location: 1 229531 -1 2301 1 3 bp Feature: gene Location: 1276936-1277115 bp Feature: gene Location: 1277112-1278503 bp Ori: EQX15769.1 Feature: domain Description: InsG Location: 1277115-1278036 bp Feature: domain Description: InsG Location: 1 2771 1 5-1 278036 bp Feature: domain Description: Transposase_20 Location: 1278159-1278405 bp Feature: domain Description: Transposase_20 Location: 1 2781 59-1 278405 bp Feature: gene Location: 1278890-1280278 bp Ori: EQX15770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279220-1279838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 279220-1 279838 bp Feature: domain Description: GIIM Note: maturase Location: 1279886-1280117 bp Feature: domain Description: GIIM Note: maturase Location: 1 279886-1 2801 1 7 bp Feature: gene Location: 1281206-1281817 bp Feature: gene Location: 1282154-1282834 bp Ori: EQX15772.1 Feature: domain Description: YcaC_related Location: 1282199-1282676 bp Feature: domain Description: YcaC_related Location: 1 2821 99-1 282676 bp Feature: gene Location: 1301083-1301256 bp Ori: EQX15789.1 Feature: domain Description: PRK09413 Location: 1301086-1301248 bp Feature: domain Description: PRK0941 3 Location: 1 301 086-1 301 248 bp Feature: gene Location: 1301590-1302798 bp Ori: EQX15790.1 Feature: domain Description: FHA_bHelix Location: 1301611-1301839 bp Feature: domain Description: FHA_bHelix Location: 1 301 61 1 -1 301 839 bp Feature: domain Description: fil_hemag_20aa Location: 1301842-1301902 bp Feature: domain Description: fil_hemag_20aa Location: 1 301 842-1 301 902 bp Feature: domain Description: FHA_bHelix Location: 1302076-1302451 bp Feature: domain Description: FHA_bHelix Location: 1 302076-1 302451 bp Feature: domain Description: FHA_bHelix Location: 1302661-1302772 bp Feature: domain Description: FHA_bHelix Location: 1 302661 -1 302772 bp Feature: gene Location: 1303409-1304221 bp Ori: EQX15791.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303682-1304138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303682-1 3041 38 bp Feature: gene Location: 1304237-1304611 bp Ori: EQX15792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1304243-1304414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 304243-1 30441 4 bp Feature: gene Location: 1305593-1306243 bp Ori: EQX15793.1 Feature: domain Description: HTH_23 Location: 1305644-1305743 bp Feature: domain Description: HTH_23 Location: 1 305644-1 305743 bp Feature: domain Description: InsE Location: 1305869-1306220 bp Feature: domain Description: InsE Location: 1 305869-1 306220 bp Feature: gene Location: 1306243-1306590 bp Ori: EQX15794.1 Feature: domain Description: TnpB_IS66 Location: 1306270-1306561 bp Feature: domain Description: TnpB_IS66 Location: 1 306270-1 306561 bp Feature: gene Location: 1307634-1307819 bp Ori: EQX15796.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1307637-1307799 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 307637-1 307799 bp Feature: gene Location: 1307803-1308051 bp Ori: EQX15797.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1307806-1308010 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 307806-1 30801 0 bp Feature: gene Location: 1308503-1309213 bp Ori: EQX15798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308704-1309205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 308704-1 309205 bp Feature: gene Location: 1309206-1309733 bp Ori: EQX15799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1309212-1309356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30921 2-1 309356 bp Feature: domain Description: GIIM Note: maturase Location: 1309434-1309656 bp Feature: domain Description: GIIM Note: maturase Location: 1 309434-1 309656 bp Feature: gene Location: 1310023-1310328 bp Ori: EQX15800.1 Feature: domain Description: YcaC_related Location: 1310041-1310323 bp Feature: domain Description: YcaC_related Location: 1 31 0041 -1 31 0323 bp Feature: gene Location: 1310301-1310411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-Retrons, AAA_15 (pfam13175), fecB (PRK11411), RVT-GII, COG3547 (Transposase ), InsG (COG3385), Transposase_20 (pfam02371), GIIM (pfam08388), YcaC_related (cd01012)
PRK09413 (IS2 repressor TnpA; Reviewed), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050)