myRT

myRT report for GCA_000460495.1_Esch_coli_UMEA_3163-1_V1

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Seq: KE701782.1 Escherichia coli UMEA 3163-1 genomic scaffold acYxk-supercont1.1, whole genome shotgun sequence (2949875 bp)
Overview 1 RT 1: 294640-300671 bp 2 RT 2: 2230045-2235908 bp Neighborhood of RT #1 [294640, 300808] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [2230045, 2235922] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 294640-294780 bp Ori: EQX37465.1 Feature: domain Description: SfsB Location: 294649-294721 bp Feature: domain Description: SfsB Location: 294649-294721 bp Feature: gene Location: 294777-295247 bp Feature: gene Location: 295594-298803 bp Ori: EQX37467.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296122-296611 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2961 22-29661 1 bp Feature: domain Description: nitrilase Location: 298117-298714 bp Feature: domain Description: nitrilase Location: 2981 1 7-29871 4 bp Feature: gene Location: 299119-299901 bp Ori: EQX37468.1 Feature: domain Description: AbiEi_3_N Location: 299131-299392 bp Feature: domain Description: AbiEi_3_N Location: 2991 31 -299392 bp Feature: domain Description: AbiEi_3 Location: 299404-299860 bp Feature: domain Description: AbiEi_3 Location: 299404-299860 bp Feature: gene Location: 299888-300808 bp Ori: EQX37469.1 Feature: domain Description: AbiEii Location: 299930-300671 bp Feature: domain Description: AbiEii Location: 299930-300671 bp Feature: gene Location: 2230045-2231301 bp Ori: EQX33340.1 Feature: domain Description: PRK13381 Location: 2230051-2231266 bp Feature: domain Description: PRK1 3381 Location: 2230051 -2231 266 bp Feature: gene Location: 2231298-2232659 bp Ori: EQX33341.1 Feature: domain Description: DcuC Location: 2231301-2232633 bp Feature: domain Description: DcuC Location: 2231 301 -2232633 bp Feature: gene Location: 2233305-2233751 bp Ori: EQX33342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2233611-2233713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223361 1 -223371 3 bp Feature: gene Location: 2234275-2235306 bp Ori: EQX33343.1 Feature: domain Description: Asparaginase_2 Location: 2234365-2235298 bp Feature: domain Description: Asparaginase_2 Location: 2234365-2235298 bp Feature: gene Location: 2235644-2235922 bp Ori: EQX33344.1 Feature: domain Description: DUF5339 Location: 2235707-2235908 bp Feature: domain Description: DUF5339 Location: 2235707-2235908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)
DUF5339 (pfam17274)