myRT

myRT report for GCA_000460515.1_Esch_coli_UMEA_3172-1_V1

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Seq: KE701793.1 Escherichia coli UMEA 3172-1 genomic scaffold acYzX-supercont1.13, whole genome shotgun sequence (149765 bp)
Overview 1 RT 1: 19773-23885 bp 2 RT 2: 146065-149765 bp Neighborhood of RT #1 [19773, 23887] InsE Tra5 YkfC RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [146065, 149765] PRK09413 PHA02517 YkfC RVT-GII GIIM PHA02517 Feature: gene Location: 19773-20072 bp Feature: domain Description: InsE Location: 19800-20067 bp Feature: domain Description: InsE Location: 1 9800-20067 bp Feature: gene Location: 20069-20716 bp Feature: domain Description: Tra5 Location: 20180-20690 bp Feature: domain Description: Tra5 Location: 201 80-20690 bp Feature: gene Location: 21036-22490 bp Feature: domain Description: YkfC Location: 21045-21231 bp Feature: domain Description: YkfC Location: 21 045-21 231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21240-21972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 240-21 972 bp Feature: domain Description: GIIM Note: maturase Location: 22047-22245 bp Feature: domain Description: GIIM Note: maturase Location: 22047-22245 bp Feature: gene Location: 23082-23561 bp Feature: domain Description: PHA02517 Location: 23142-23496 bp Feature: domain Description: PHA0251 7 Location: 231 42-23496 bp Feature: gene Location: 23561-23887 bp Feature: domain Description: InsE Location: 23564-23885 bp Feature: domain Description: InsE Location: 23564-23885 bp Feature: gene Location: 146065-146430 bp Feature: domain Description: PRK09413 Location: 146068-146428 bp Feature: domain Description: PRK0941 3 Location: 1 46068-1 46428 bp Feature: gene Location: 146520-146966 bp Feature: domain Description: PHA02517 Location: 146523-146964 bp Feature: domain Description: PHA0251 7 Location: 1 46523-1 46964 bp Feature: gene Location: 147083-148537 bp Feature: domain Description: YkfC Location: 147092-147278 bp Feature: domain Description: YkfC Location: 1 47092-1 47278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147287-148019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47287-1 4801 9 bp Feature: domain Description: GIIM Note: maturase Location: 148094-148292 bp Feature: domain Description: GIIM Note: maturase Location: 1 48094-1 48292 bp Feature: gene Location: 149129-149608 bp Feature: domain Description: PHA02517 Location: 149189-149543 bp Feature: domain Description: PHA0251 7 Location: 1 491 89-1 49543 bp Feature: gene Location: 149608-149765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), YkfC (COG3344), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: KE701800.1 Escherichia coli UMEA 3172-1 genomic scaffold acYzX-supercont1.8, whole genome shotgun sequence (492570 bp)
Overview 1 RT 1: 168988-173343 bp Neighborhood of RT #1 [168988, 173366] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 168988-169203 bp Feature: gene Location: 169294-169575 bp Feature: domain Description: HTH_XRE Location: 169309-169474 bp Feature: domain Description: HTH_XRE Location: 169309-169474 bp Feature: gene Location: 169568-170668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169709-170261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169709-1702 61 bp Feature: gene Location: 170745-172247 bp Feature: domain Description: PRK13889 Location: 170748-171327 bp Feature: domain Description: PRK13889 Location: 170748-17132 7 bp Feature: gene Location: 173055-173366 bp Feature: domain Description: TraD Location: 173169-173343 bp Feature: domain Description: TraD Location: 173169-173343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)