myRT

myRT report for GCA_000460695.1_Esch_coli_UMEA_3193-1_V1

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Seq: KE701965.1 Escherichia coli UMEA 3193-1 genomic scaffold acYyg-supercont1.7, whole genome shotgun sequence (802303 bp)
Overview 1 RT 1: 789854-794185 bp Neighborhood of RT #1 [789854, 794235] fecB RVT-GII COG3547 COG3547 Feature: gene Location: 789854-790153 bp Feature: gene Location: 790272-790712 bp Ori: EQX73214.1 Feature: domain Description: fecB Location: 790275-790701 bp Feature: domain Description: fecB Location: 790275-790701 bp Feature: gene Location: 791660-792994 bp Ori: EQX73215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791945-792632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 945-792632 bp Feature: gene Location: 793233-793628 bp Ori: EQX73216.1 Feature: domain Description: COG3547 Location: 793251-793542 bp Feature: domain Description: COG3547 Location: 793251 -793542 bp Feature: gene Location: 793594-794235 bp Ori: EQX73217.1 Feature: domain Description: COG3547 Location: 793603-794185 bp Feature: domain Description: COG3547 Location: 793603-7941 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecB (PRK11411), RVT-GII, COG3547 (Transposase )

Seq: KE701966.1 Escherichia coli UMEA 3193-1 genomic scaffold acYyg-supercont1.8, whole genome shotgun sequence (188910 bp)
Overview 1 RT 1: 33013-38911 bp 2 RT 2: 58305-67633 bp Neighborhood of RT #1 [33013, 38911] YcaC_related RVT-GII GIIM InsG Transposase_20 Neighborhood of RT #2 [58305, 67633] PRK09413 FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix RVT-GII RVT-GII HTH_23 InsE DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM YcaC_related Feature: gene Location: 33013-33693 bp Ori: EQX72899.1 Feature: domain Description: YcaC_related Location: 33058-33535 bp Feature: domain Description: YcaC_related Location: 33058-33535 bp Feature: gene Location: 34030-34641 bp Feature: gene Location: 35569-36957 bp Ori: EQX72901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35899-36517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35899-36517 bp Feature: domain Description: GIIM Note: maturase Location: 36565-36796 bp Feature: domain Description: GIIM Note: maturase Location: 36565-36796 bp Feature: gene Location: 37344-38735 bp Ori: EQX72902.1 Feature: domain Description: InsG Location: 37347-38268 bp Feature: domain Description: InsG Location: 37347-382 68 bp Feature: domain Description: Transposase_20 Location: 38391-38637 bp Feature: domain Description: Transposase_2 0 Location: 38391-38637 bp Feature: gene Location: 38732-38911 bp Feature: gene Location: 58305-58478 bp Ori: EQX72922.1 Feature: domain Description: PRK09413 Location: 58308-58470 bp Feature: domain Description: PRK09413 Location: 58308-58470 bp Feature: gene Location: 58815-60020 bp Ori: EQX72923.1 Feature: domain Description: FHA_bHelix Location: 58833-59061 bp Feature: domain Description: FHA_bHelix Location: 58833-59061 bp Feature: domain Description: fil_hemag_20aa Location: 59064-59124 bp Feature: domain Description: fil_hemag_2 0aa Location: 59064-5912 4 bp Feature: domain Description: FHA_bHelix Location: 59298-59673 bp Feature: domain Description: FHA_bHelix Location: 592 98-59673 bp Feature: domain Description: FHA_bHelix Location: 59883-59991 bp Feature: domain Description: FHA_bHelix Location: 59883-59991 bp Feature: gene Location: 60631-61443 bp Ori: EQX72924.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60904-61360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60904-61360 bp Feature: gene Location: 61459-61833 bp Ori: EQX72925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61465-61636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61465-61636 bp Feature: gene Location: 62573-62818 bp Feature: gene Location: 62815-63465 bp Ori: EQX72927.1 Feature: domain Description: HTH_23 Location: 62866-62965 bp Feature: domain Description: HTH_2 3 Location: 62 866-62 965 bp Feature: domain Description: InsE Location: 63091-63442 bp Feature: domain Description: InsE Location: 63091-63442 bp Feature: gene Location: 64856-65041 bp Ori: EQX72930.1 Feature: domain Description: DDE_Tnp_IS66 Location: 64859-65021 bp Feature: domain Description: DDE_Tnp_IS66 Location: 64859-6502 1 bp Feature: gene Location: 65025-65273 bp Ori: EQX72931.1 Feature: domain Description: DDE_Tnp_IS66 Location: 65028-65232 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6502 8-652 32 bp Feature: gene Location: 65725-66435 bp Ori: EQX72932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65926-66427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6592 6-6642 7 bp Feature: gene Location: 66428-66955 bp Ori: EQX72933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66434-66578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66434-66578 bp Feature: domain Description: GIIM Note: maturase Location: 66656-66878 bp Feature: domain Description: GIIM Note: maturase Location: 66656-66878 bp Feature: gene Location: 67245-67550 bp Ori: EQX72934.1 Feature: domain Description: YcaC_related Location: 67263-67545 bp Feature: domain Description: YcaC_related Location: 672 63-67545 bp Feature: gene Location: 67523-67633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaC_related (cd01012), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371), PRK09413 (IS2 repressor TnpA; Reviewed), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), HTH_23 (pfam13384), InsE (COG2963)
DDE_Tnp_IS66 (pfam03050)