myRT

myRT report for GCA_000460895.1_Esch_coli_UMEA_3217-1_V1

Download annotations/find similar RTs

Seq: KE702093.1 Escherichia coli UMEA 3217-1 genomic scaffold acYzC-supercont1.2, whole genome shotgun sequence (1393536 bp)
Overview 1 RT 1: 100646-108275 bp Neighborhood of RT #1 [100646, 108739] HTH_33 DDE_3 RVT-AbiP2 Arm-DNA-bind_3 Feature: gene Location: 100646-101032 bp Feature: gene Location: 101108-102007 bp Ori: EQY27507.1 Feature: domain Description: HTH_33 Location: 101270-101432 bp Feature: domain Description: HTH_33 Location: 1 01 270-1 01 432 bp Feature: domain Description: DDE_3 Location: 101474-101903 bp Feature: domain Description: DDE_3 Location: 1 01 474-1 01 903 bp Feature: gene Location: 102109-103647 bp Ori: EQY27508.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 102538-102994 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 02538-1 02994 bp Feature: gene Location: 103870-107721 bp Feature: gene Location: 107990-108739 bp Ori: EQY27510.1 Feature: domain Description: Arm-DNA-bind_3 Location: 108020-108275 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 08020-1 08275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, Arm-DNA-bind_3 (pfam13356)

Seq: KE702094.1 Escherichia coli UMEA 3217-1 genomic scaffold acYzC-supercont1.3, whole genome shotgun sequence (586349 bp)
Overview 1 RT 1: 463032-467415 bp Neighborhood of RT #1 [463032, 467415] TraD PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 463032-463343 bp Ori: EQY23598.1 Feature: domain Description: TraD Location: 463146-463320 bp Feature: domain Description: TraD Location: 463146-46332 0 bp Feature: gene Location: 464156-465658 bp Ori: EQY23599.1 Feature: domain Description: PRK13889 Location: 464159-464741 bp Feature: domain Description: PRK13889 Location: 464159-464741 bp Feature: gene Location: 465735-466835 bp Ori: EQY23600.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 465876-466428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 465876-46642 8 bp Feature: gene Location: 466828-467109 bp Ori: EQY23601.1 Feature: domain Description: HTH_XRE Location: 466843-467008 bp Feature: domain Description: HTH_XRE Location: 466843-467008 bp Feature: gene Location: 467200-467415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)