myRT

myRT report for GCA_000461235.1_Esch_coli_UMEA_3318-1_V1

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Seq: KE702348.1 Escherichia coli UMEA 3318-1 genomic scaffold acYxB-supercont1.2, whole genome shotgun sequence (288582 bp)
Overview 1 RT 1: 173578-178028 bp Neighborhood of RT #1 [173578, 178096] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS240 Feature: gene Location: 173578-173904 bp Ori: EQZ04908.1 Feature: domain Description: InsE Location: 173581-173902 bp Feature: domain Description: InsE Location: 1 73581 -1 73902 bp Feature: gene Location: 173904-174383 bp Ori: EQZ04909.1 Feature: domain Description: PHA02517 Location: 173964-174318 bp Feature: domain Description: PHA0251 7 Location: 1 73964-1 7431 8 bp Feature: gene Location: 174975-176498 bp Ori: EQZ04910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175248-175980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75248-1 75980 bp Feature: domain Description: GIIM Note: maturase Location: 176055-176253 bp Feature: domain Description: GIIM Note: maturase Location: 1 76055-1 76253 bp Feature: gene Location: 176690-177061 bp Ori: EQZ04911.1 Feature: domain Description: PHA02517 Location: 176693-177059 bp Feature: domain Description: PHA0251 7 Location: 1 76693-1 77059 bp Feature: gene Location: 177635-178096 bp Ori: EQZ04912.1 Feature: domain Description: DDE_Tnp_IS240 Location: 177638-178028 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1 77638-1 78028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS240 (pfam13610)

Seq: KE702346.1 Escherichia coli UMEA 3318-1 genomic scaffold acYxB-supercont1.13, whole genome shotgun sequence (146945 bp)
Overview 1 RT 1: 42969-47600 bp Neighborhood of RT #1 [42969, 47785] InsE PHA02517 RVT-GII GIIM PHA02517 Rep_3 Feature: gene Location: 42969-43292 bp Ori: EQY92397.1 Feature: domain Description: InsE Location: 42981-43290 bp Feature: domain Description: InsE Location: 42 981-432 90 bp Feature: gene Location: 43292-43771 bp Ori: EQY92398.1 Feature: domain Description: PHA02517 Location: 43352-43706 bp Feature: domain Description: PHA02 517 Location: 43352 -43706 bp Feature: gene Location: 44363-45886 bp Ori: EQY92399.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44636-45368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44636-45368 bp Feature: domain Description: GIIM Note: maturase Location: 45443-45641 bp Feature: domain Description: GIIM Note: maturase Location: 45443-45641 bp Feature: gene Location: 46003-46449 bp Ori: EQY92400.1 Feature: domain Description: PHA02517 Location: 46006-46447 bp Feature: domain Description: PHA02 517 Location: 46006-46447 bp Feature: gene Location: 46775-47785 bp Ori: EQY92401.1 Feature: domain Description: Rep_3 Location: 46847-47600 bp Feature: domain Description: Rep_3 Location: 46847-47600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rep_3 (pfam01051)

Seq: KE702342.1 Escherichia coli UMEA 3318-1 genomic scaffold acYxB-supercont1.1, whole genome shotgun sequence (230760 bp)
Overview 1 RT 1: 154417-159145 bp Neighborhood of RT #1 [154417, 159147] PRK15262 InsE RVT-GII GIIM PHA02517 PRK15263 Feature: gene Location: 154417-155013 bp Ori: EQZ05906.1 Feature: domain Description: PRK15262 Location: 154429-155011 bp Feature: domain Description: PRK15262 Location: 154429-155011 bp Feature: gene Location: 155086-155364 bp Ori: EQZ05907.1 Feature: domain Description: InsE Location: 155098-155356 bp Feature: domain Description: InsE Location: 155098-1553 56 bp Feature: gene Location: 156423-157946 bp Ori: EQZ05908.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156696-157428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156696-157428 bp Feature: domain Description: GIIM Note: maturase Location: 157503-157701 bp Feature: domain Description: GIIM Note: maturase Location: 157503 -157701 bp Feature: gene Location: 158111-158503 bp Ori: EQZ05909.1 Feature: domain Description: PHA02517 Location: 158117-158495 bp Feature: domain Description: PHA02517 Location: 158117-158495 bp Feature: gene Location: 158542-159147 bp Ori: EQZ05910.1 Feature: domain Description: PRK15263 Location: 158566-159145 bp Feature: domain Description: PRK15263 Location: 158566-159145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15262 (putative fimbrial protein StaF; Provisional), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK15263 (fimbrial-like protein)

Seq: KE702349.1 Escherichia coli UMEA 3318-1 genomic scaffold acYxB-supercont1.3, whole genome shotgun sequence (2383200 bp)
Overview 1 RT 1: 1740187-1745654 bp Neighborhood of RT #1 [1740187, 1745659] Phage_int_SAM_2 Integrase_1 RVT-UG12 cbl PRK11233 Feature: gene Location: 1740187-1741098 bp Ori: EQZ02435.1 Feature: domain Description: Phage_int_SAM_2 Location: 1740190-1740460 bp Feature: domain Description: Phage_int_SAM_2 Location: 174 0190-174 04 60 bp Feature: domain Description: Integrase_1 Location: 1740493-1740937 bp Feature: domain Description: Integrase_1 Location: 174 04 93-174 0937 bp Feature: gene Location: 1741407-1741670 bp Feature: gene Location: 1741667-1742962 bp Ori: EQZ02437.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1742018-1742453 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 174 2018-174 24 53 bp Feature: gene Location: 1743690-1744640 bp Ori: EQZ02438.1 Feature: domain Description: cbl Location: 1743693-1744638 bp Feature: domain Description: cbl Location: 174 3693-174 4 638 bp Feature: gene Location: 1744742-1745659 bp Ori: EQZ02439.1 Feature: domain Description: PRK11233 Location: 1744745-1745654 bp Feature: domain Description: PRK11233 Location: 174 4 74 5-174 5654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-UG12, cbl (PRK12679), PRK11233 (nitrogen assimilation transcriptional regulator; Provisional)