myRT

myRT report for GCA_000461675.1_Esch_coli_UMEA_3718-1_V1

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Seq: KE702585.1 Escherichia coli UMEA 3718-1 genomic scaffold acYyo-supercont1.5, whole genome shotgun sequence (484824 bp)
Overview 1 RT 1: 293351-298665 bp Neighborhood of RT #1 [293351, 298670] RVT-GII GIIM LacI PBP1_GntR PtsN Feature: gene Location: 293351-293695 bp Feature: gene Location: 293905-294231 bp Feature: gene Location: 295478-296398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295547-295958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295547-295958 bp Feature: domain Description: GIIM Note: maturase Location: 296006-296228 bp Feature: domain Description: GIIM Note: maturase Location: 296006-296228 bp Feature: gene Location: 296925-297956 bp Feature: domain Description: LacI Location: 296967-297102 bp Feature: domain Description: LacI Location: 296967-2971 02 bp Feature: domain Description: PBP1_GntR Location: 297141-297951 bp Feature: domain Description: PBP1 _GntR Location: 2971 41 -297951 bp Feature: gene Location: 298227-298670 bp Feature: domain Description: PtsN Location: 298230-298665 bp Feature: domain Description: PtsN Location: 298230-298665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575), PtsN (COG1762)

Seq: KE702583.1 Escherichia coli UMEA 3718-1 genomic scaffold acYyo-supercont1.3, whole genome shotgun sequence (636920 bp)
Overview 1 RT 1: 76829-81829 bp Neighborhood of RT #1 [76829, 81831] RVT-GII YhhI YhhI YhhI PRK01271 Feature: gene Location: 76829-77613 bp Feature: gene Location: 77614-78012 bp Feature: gene Location: 78651-79535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78927-79518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7892 7-79518 bp Feature: gene Location: 80175-81293 bp Feature: domain Description: YhhI Location: 80178-80523 bp Feature: domain Description: YhhI Location: 80178-8052 3 bp Feature: domain Description: YhhI Location: 80580-80934 bp Feature: domain Description: YhhI Location: 80580-80934 bp Feature: domain Description: YhhI Location: 80952-81195 bp Feature: domain Description: YhhI Location: 80952 -81195 bp Feature: gene Location: 81604-81831 bp Feature: domain Description: PRK01271 Location: 81607-81829 bp Feature: domain Description: PRK012 71 Location: 81607-8182 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YhhI (COG5433), PRK01271 (tautomerase PptA)

Seq: KE702584.1 Escherichia coli UMEA 3718-1 genomic scaffold acYyo-supercont1.4, whole genome shotgun sequence (2466879 bp)
Overview 1 RT 1: 2070000-2077418 bp Neighborhood of RT #1 [2070000, 2077420] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 COG3943 PRK15011 Feature: gene Location: 2070000-2070320 bp Feature: domain Description: DUF5375 Location: 2070003-2070318 bp Feature: domain Description: DUF53 75 Location: 2070003 -20703 18 bp Feature: gene Location: 2070335-2072668 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2070425-2070533 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2070425-207053 3 bp Feature: domain Description: COG3378 Location: 2071142-2072657 bp Feature: domain Description: COG3 3 78 Location: 2071142-2072657 bp Feature: gene Location: 2073255-2074886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2073570-2074167 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2073 570-2074167 bp Feature: domain Description: TIR_2 Location: 2074491-2074848 bp Feature: domain Description: TIR_2 Location: 2074491-2074848 bp Feature: gene Location: 2075708-2075854 bp Feature: domain Description: COG3943 Location: 2075711-2075810 bp Feature: domain Description: COG3 943 Location: 2075711-2075810 bp Feature: gene Location: 2076236-2077420 bp Feature: domain Description: PRK15011 Location: 2076245-2077418 bp Feature: domain Description: PRK15011 Location: 2076245-2077418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)