myRT

myRT report for GCA_000461735.1_Esch_coli_UMEA_3834-1_V1

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Seq: KE702634.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.6, whole genome shotgun sequence (2660578 bp)
Overview 1 RT 1: 637127-642894 bp Neighborhood of RT #1 [637127, 642894] PRK10549 PRK10710 RVT_N RVT-GII GIIM HNHc DUF1508 DUF1508 Feature: gene Location: 637127-638530 bp Feature: domain Description: PRK10549 Location: 637130-638528 bp Feature: domain Description: PRK1 0549 Location: 6371 30-638528 bp Feature: gene Location: 638527-639249 bp Feature: domain Description: PRK10710 Location: 638530-639247 bp Feature: domain Description: PRK1 071 0 Location: 638530-639247 bp Feature: gene Location: 640066-641766 bp Feature: RT Description: RVT_N Location: 640120-640363 bp Feature: RT Description: RVT_N Location: 6401 20-640363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640408-641044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640408-641 044 bp Feature: domain Description: GIIM Note: maturase Location: 641095-641329 bp Feature: domain Description: GIIM Note: maturase Location: 641 095-641 329 bp Feature: domain Description: HNHc Note: nucleases Location: 641560-641710 bp Feature: domain Description: HNHc Note: nucleases Location: 641 560-641 71 0 bp Feature: gene Location: 641781-642164 bp Feature: domain Description: DUF1508 Location: 641865-642003 bp Feature: domain Description: DUF1 508 Location: 641 865-642003 bp Feature: domain Description: DUF1508 Location: 642015-642156 bp Feature: domain Description: DUF1 508 Location: 64201 5-6421 56 bp Feature: gene Location: 642289-642894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10549 (two-component system sensor histidine kinase BaeS), PRK10710 (DNA-binding transcriptional regulator BaeR; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1508 (pfam07411)

Seq: KE702635.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.7, whole genome shotgun sequence (656319 bp)
Overview 1 RT 1: 462408-466758 bp Neighborhood of RT #1 [462408, 466760] TetR_N TetR_C_28 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 462408-462986 bp Feature: domain Description: TetR_N Location: 462477-462612 bp Feature: domain Description: TetR_N Location: 462 477-462 612 bp Feature: domain Description: TetR_C_28 Location: 462687-462975 bp Feature: domain Description: TetR_C_2 8 Location: 462 687-462 975 bp Feature: gene Location: 463277-463723 bp Feature: domain Description: PHA02517 Location: 463280-463721 bp Feature: domain Description: PHA02 517 Location: 4632 80-46372 1 bp Feature: gene Location: 463840-465363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464113-464845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464113-464845 bp Feature: domain Description: GIIM Note: maturase Location: 464920-465118 bp Feature: domain Description: GIIM Note: maturase Location: 46492 0-465118 bp Feature: gene Location: 465955-466434 bp Feature: domain Description: PHA02517 Location: 466015-466369 bp Feature: domain Description: PHA02 517 Location: 466015-466369 bp Feature: gene Location: 466434-466760 bp Feature: domain Description: InsE Location: 466437-466758 bp Feature: domain Description: InsE Location: 466437-466758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_28 (pfam17937), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: KE702626.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.12, whole genome shotgun sequence (22603 bp)
Overview 1 RT 1: 681-3220 bp 2 RT 2: 14541-18659 bp Neighborhood of RT #1 [681, 3222] RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #2 [14541, 18659] DUF1281 PRK13699 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 681-2204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1686 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1959 bp Feature: domain Description: GIIM Note: maturase Location: 1761-1959 bp Feature: gene Location: 2321-2767 bp Feature: domain Description: PHA02517 Location: 2324-2765 bp Feature: domain Description: PHA02517 Location: 23 24-2765 bp Feature: gene Location: 2857-3222 bp Feature: domain Description: PRK09413 Location: 2860-3220 bp Feature: domain Description: PRK09413 Location: 2860-3 220 bp Feature: gene Location: 14541-14900 bp Feature: domain Description: DUF1281 Location: 14550-14865 bp Feature: domain Description: DUF1281 Location: 14550-14865 bp Feature: gene Location: 15351-15521 bp Feature: domain Description: PRK13699 Location: 15354-15438 bp Feature: domain Description: PRK13 699 Location: 153 54-1543 8 bp Feature: gene Location: 15504-17204 bp Feature: RT Description: RVT_N Location: 15558-15801 bp Feature: RT Description: RVT_N Location: 15558-15801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15846-16482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15846-16482 bp Feature: domain Description: GIIM Note: maturase Location: 16533-16767 bp Feature: domain Description: GIIM Note: maturase Location: 1653 3 -16767 bp Feature: domain Description: HNHc Note: nucleases Location: 16998-17148 bp Feature: domain Description: HNHc Note: nucleases Location: 16998-17148 bp Feature: gene Location: 17784-18437 bp Feature: domain Description: PRK13699 Location: 17829-18435 bp Feature: domain Description: PRK13 699 Location: 17829-1843 5 bp Feature: gene Location: 18438-18659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), DUF1281 (pfam06924), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), HNHc (smart00507)

Seq: KE702631.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.3, whole genome shotgun sequence (734843 bp)
Overview 1 RT 1: 499725-504378 bp Neighborhood of RT #1 [499725, 504378] DUF3987 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 499725-499910 bp Feature: gene Location: 500542-501729 bp Feature: domain Description: DUF3987 Location: 500635-501712 bp Feature: domain Description: DUF3987 Location: 500635-501712 bp Feature: gene Location: 501803-503503 bp Feature: RT Description: RVT_N Location: 501857-502100 bp Feature: RT Description: RVT_N Location: 501857-502100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502145-502781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50214 5-502781 bp Feature: domain Description: GIIM Note: maturase Location: 502832-503066 bp Feature: domain Description: GIIM Note: maturase Location: 502832-503066 bp Feature: domain Description: HNHc Note: nucleases Location: 503297-503447 bp Feature: domain Description: HNHc Note: nucleases Location: 503297-5034 4 7 bp Feature: gene Location: 504226-504378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: KE702624.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.10, whole genome shotgun sequence (72476 bp)
Overview 1 RT 1: 53978-58766 bp Neighborhood of RT #1 [53978, 58766] StbA PRK13699 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 53978-54940 bp Feature: domain Description: StbA Location: 53981-54929 bp Feature: domain Description: StbA Location: 5 3981-5 4929 bp Feature: gene Location: 55458-55628 bp Feature: domain Description: PRK13699 Location: 55461-55545 bp Feature: domain Description: PRK13699 Location: 5 5 461-5 5 5 45 bp Feature: gene Location: 55611-57311 bp Feature: RT Description: RVT_N Location: 55665-55908 bp Feature: RT Description: RVT_N Location: 5 5 665 -5 5 908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55953-56589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 95 3-5 65 89 bp Feature: domain Description: GIIM Note: maturase Location: 56640-56874 bp Feature: domain Description: GIIM Note: maturase Location: 5 6640-5 6874 bp Feature: domain Description: HNHc Note: nucleases Location: 57105-57255 bp Feature: domain Description: HNHc Note: nucleases Location: 5 7105 -5 725 5 bp Feature: gene Location: 57891-58544 bp Feature: domain Description: PRK13699 Location: 57936-58542 bp Feature: domain Description: PRK13699 Location: 5 7936-5 85 42 bp Feature: gene Location: 58545-58766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: KE702637.1 Escherichia coli UMEA 3834-1 genomic scaffold acXtH-supercont1.9, whole genome shotgun sequence (47986 bp)
Overview 1 RT 1: 28134-32187 bp 2 RT 2: 43014-47637 bp Neighborhood of RT #1 [28134, 32189] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [43014, 47882] PRK08181 rve RVT-GII GIIM Feature: gene Location: 28134-28703 bp Feature: domain Description: autotrans_barl Location: 28215-28650 bp Feature: domain Description: autotrans_barl Location: 28215-286 50 bp Feature: gene Location: 28706-29152 bp Feature: domain Description: PHA02517 Location: 28709-29150 bp Feature: domain Description: PHA02517 Location: 28709-29150 bp Feature: gene Location: 29269-30792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29542-30274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29542-30274 bp Feature: domain Description: GIIM Note: maturase Location: 30349-30547 bp Feature: domain Description: GIIM Note: maturase Location: 30349-30547 bp Feature: gene Location: 31384-31863 bp Feature: domain Description: PHA02517 Location: 31444-31798 bp Feature: domain Description: PHA02517 Location: 31444-31798 bp Feature: gene Location: 31863-32189 bp Feature: domain Description: InsE Location: 31866-32187 bp Feature: domain Description: InsE Location: 3186 6 -32187 bp Feature: gene Location: 43014-43769 bp Feature: domain Description: PRK08181 Location: 43038-43749 bp Feature: domain Description: PRK08181 Location: 43038-43749 bp Feature: gene Location: 43766-45265 bp Feature: domain Description: rve Location: 44138-44531 bp Feature: domain Description: rve Location: 44138-44531 bp Feature: gene Location: 46359-47882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46632-47364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 6 32-4736 4 bp Feature: domain Description: GIIM Note: maturase Location: 47439-47637 bp Feature: domain Description: GIIM Note: maturase Location: 47439-476 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PRK08181 (transposase; Validated), rve (pfam00665)