myRT

myRT report for GCA_000461835.1_Esch_coli_UMEA_4075-1_V1

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Seq: KE702713.1 Escherichia coli UMEA 4075-1 genomic scaffold acYzl-supercont1.6, whole genome shotgun sequence (773021 bp)
Overview 1 RT 1: 503290-512610 bp 2 RT 2: 532018-537758 bp Neighborhood of RT #1 [503290, 512618] YcaC_related RVT-GII GIIM RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66 TnpB_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix PRK09413 Neighborhood of RT #2 [532018, 537916] InsG Transposase_20 RVT-GII GIIM YcaC_related Feature: gene Location: 503290-503400 bp Feature: gene Location: 503373-503678 bp Ori: ERA29900.1 Feature: domain Description: YcaC_related Location: 503391-503673 bp Feature: domain Description: YcaC_related Location: 503391 -503673 bp Feature: gene Location: 503968-504495 bp Ori: ERA29901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503974-504118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503974-5041 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 504196-504418 bp Feature: domain Description: GIIM Note: maturase Location: 5041 96-50441 8 bp Feature: gene Location: 504488-505198 bp Ori: ERA29902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504689-505190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504689-5051 90 bp Feature: gene Location: 505650-505898 bp Ori: ERA29903.1 Feature: domain Description: DDE_Tnp_IS66 Location: 505653-505857 bp Feature: domain Description: DDE_Tnp_IS66 Location: 505653-505857 bp Feature: gene Location: 505882-506067 bp Ori: ERA29904.1 Feature: domain Description: DDE_Tnp_IS66 Location: 505885-506047 bp Feature: domain Description: DDE_Tnp_IS66 Location: 505885-506047 bp Feature: gene Location: 507111-507458 bp Ori: ERA29906.1 Feature: domain Description: TnpB_IS66 Location: 507138-507429 bp Feature: domain Description: TnpB_IS66 Location: 5071 38-507429 bp Feature: gene Location: 507458-508108 bp Ori: ERA29907.1 Feature: domain Description: HTH_23 Location: 507509-507608 bp Feature: domain Description: HTH_23 Location: 507509-507608 bp Feature: domain Description: InsE Location: 507734-508085 bp Feature: domain Description: InsE Location: 507734-508085 bp Feature: gene Location: 509090-509464 bp Ori: ERA29908.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509096-509267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509096-509267 bp Feature: gene Location: 509480-510292 bp Ori: ERA29909.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509753-510209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509753-51 0209 bp Feature: gene Location: 510903-512108 bp Ori: ERA29910.1 Feature: domain Description: FHA_bHelix Location: 510921-511155 bp Feature: domain Description: FHA_bHelix Location: 51 0921 -51 1 1 55 bp Feature: domain Description: fil_hemag_20aa Location: 511155-511275 bp Feature: domain Description: fil_hemag_20aa Location: 51 1 1 55-51 1 275 bp Feature: domain Description: FHA_bHelix Location: 511386-511749 bp Feature: domain Description: FHA_bHelix Location: 51 1 386-51 1 749 bp Feature: domain Description: FHA_bHelix Location: 511971-512079 bp Feature: domain Description: FHA_bHelix Location: 51 1 971 -51 2079 bp Feature: gene Location: 512445-512618 bp Ori: ERA29911.1 Feature: domain Description: PRK09413 Location: 512448-512610 bp Feature: domain Description: PRK0941 3 Location: 51 2448-51 261 0 bp Feature: gene Location: 532018-532197 bp Feature: gene Location: 532194-533585 bp Ori: ERA29930.1 Feature: domain Description: InsG Location: 532197-533118 bp Feature: domain Description: InsG Location: 5321 97-5331 1 8 bp Feature: domain Description: Transposase_20 Location: 533241-533487 bp Feature: domain Description: Transposase_20 Location: 533241 -533487 bp Feature: gene Location: 533972-535360 bp Ori: ERA29931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534302-534920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534302-534920 bp Feature: domain Description: GIIM Note: maturase Location: 534968-535199 bp Feature: domain Description: GIIM Note: maturase Location: 534968-5351 99 bp Feature: gene Location: 536288-536899 bp Feature: gene Location: 537236-537916 bp Ori: ERA29933.1 Feature: domain Description: YcaC_related Location: 537281-537758 bp Feature: domain Description: YcaC_related Location: 537281 -537758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaC_related (cd01012), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), PRK09413 (IS2 repressor TnpA; Reviewed)
InsG (COG3385), Transposase_20 (pfam02371)