myRT

myRT report for GCA_000464665.1_NC15_1

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Seq: KE734694.1 Planktothrix agardhii NIVA-CYA 15 genomic scaffold scaffold00001, whole genome shotgun sequence (3358682 bp)
Overview 1 RT 1: 304346-311424 bp 2 RT 2: 411622-415875 bp 3 RT 3: 1282369-1288033 bp 4 RT 4: 1871195-1879562 bp 5 RT 5: 2135550-2141714 bp 6 RT 6: 2772248-2775636 bp 7 RT 7: 3097130-3101196 bp 8 RT 8: 3279983-3286402 bp Neighborhood of RT #1 [304346, 311424] UvrD DEDDh UvrD RVT-UG25 Neighborhood of RT #2 [411622, 415875] NrdF HNH_3 RVT-GII GIIM McrA RVT_N Neighborhood of RT #3 [1282369, 1288050] TPR TPR_1 YfmG Avd_like RVT-DGRs HicB Uma2 Neighborhood of RT #4 [1871195, 1879576] secD odpB RVT-UG14 UvrD DEDDh UvrD ZnuC Neighborhood of RT #5 [2135550, 2141725] SMC_prok_B Smc Crp RVT_N RVT-GII GIIM HNH argS DALR_1 Neighborhood of RT #6 [2772248, 2775644] TPR PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 Neighborhood of RT #7 [3097130, 3101270] VapI Uma2 RVT-UG12 HigB VapI Neighborhood of RT #8 [3279983, 3286402] FruBisAldo_II_B RVT_N RVT-GII GIIM HNHc EVE DUF262 Feature: gene Location: 304346-304843 bp Feature: gene Location: 305215-307674 bp Feature: domain Description: UvrD Location: 305230-306496 bp Feature: domain Description: UvrD Location: 305230-306496 bp Feature: domain Description: DEDDh Location: 306607-307069 bp Feature: domain Description: DEDDh Location: 306607-307069 bp Feature: domain Description: UvrD Location: 307138-307657 bp Feature: domain Description: UvrD Location: 3071 38-307657 bp Feature: gene Location: 307664-310717 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 309149-309548 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3091 49-309548 bp Feature: gene Location: 310798-310998 bp Feature: gene Location: 311182-311424 bp Feature: gene Location: 411622-412023 bp Feature: domain Description: NrdF Location: 411634-412015 bp Feature: domain Description: NrdF Location: 41 1 634-41 201 5 bp Feature: gene Location: 412096-412845 bp Feature: domain Description: HNH_3 Location: 412237-412369 bp Feature: domain Description: HNH_3 Location: 41 2237-41 2369 bp Feature: gene Location: 413551-414639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413557-413899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3557-41 3899 bp Feature: domain Description: GIIM Note: maturase Location: 413998-414220 bp Feature: domain Description: GIIM Note: maturase Location: 41 3998-41 4220 bp Feature: domain Description: McrA Location: 414283-414577 bp Feature: domain Description: McrA Location: 41 4283-41 4577 bp Feature: gene Location: 414888-415379 bp Feature: domain Description: RVT_N Location: 414990-415236 bp Feature: domain Description: RVT_N Location: 41 4990-41 5236 bp Feature: gene Location: 415681-415875 bp Feature: gene Location: 1282369-1285263 bp Feature: domain Description: TPR Location: 1284013-1284205 bp Feature: domain Description: TPR Location: 1 28401 3-1 284205 bp Feature: domain Description: TPR_1 Location: 1284229-1284319 bp Feature: domain Description: TPR_1 Location: 1 284229-1 28431 9 bp Feature: domain Description: YfmG Location: 1284427-1285243 bp Feature: domain Description: YfmG Location: 1 284427-1 285243 bp Feature: gene Location: 1285507-1285857 bp Feature: domain Description: Avd_like Location: 1285525-1285831 bp Feature: domain Description: Avd_like Location: 1 285525-1 285831 bp Feature: gene Location: 1285854-1286912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1286058-1286706 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 286058-1 286706 bp Feature: gene Location: 1287239-1287430 bp Feature: domain Description: HicB Location: 1287242-1287416 bp Feature: domain Description: HicB Location: 1 287242-1 28741 6 bp Feature: gene Location: 1287448-1288050 bp Feature: domain Description: Uma2 Location: 1287481-1288033 bp Feature: domain Description: Uma2 Location: 1 287481 -1 288033 bp Feature: gene Location: 1871195-1872604 bp Feature: domain Description: secD Location: 1871219-1872521 bp Feature: domain Description: secD Location: 1 871 21 9-1 872521 bp Feature: gene Location: 1872672-1873682 bp Feature: domain Description: odpB Location: 1872705-1873677 bp Feature: domain Description: odpB Location: 1 872705-1 873677 bp Feature: gene Location: 1874355-1875905 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1874787-1875279 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 874787-1 875279 bp Feature: gene Location: 1875968-1878427 bp Feature: domain Description: UvrD Location: 1875983-1877255 bp Feature: domain Description: UvrD Location: 1 875983-1 877255 bp Feature: domain Description: DEDDh Location: 1877363-1877822 bp Feature: domain Description: DEDDh Location: 1 877363-1 877822 bp Feature: domain Description: UvrD Location: 1877906-1878410 bp Feature: domain Description: UvrD Location: 1 877906-1 87841 0 bp Feature: gene Location: 1878782-1879576 bp Feature: domain Description: ZnuC Location: 1878863-1879562 bp Feature: domain Description: ZnuC Location: 1 878863-1 879562 bp Feature: gene Location: 2135550-2137289 bp Feature: domain Description: SMC_prok_B Location: 2135688-2136498 bp Feature: domain Description: SMC_prok_B Location: 21 35688-21 36498 bp Feature: domain Description: Smc Location: 2136912-2137269 bp Feature: domain Description: Smc Location: 21 3691 2-21 37269 bp Feature: gene Location: 2137339-2138100 bp Feature: domain Description: Crp Location: 2137585-2138029 bp Feature: domain Description: Crp Location: 21 37585-21 38029 bp Feature: gene Location: 2138386-2140149 bp Feature: domain Description: RVT_N Location: 2138440-2138686 bp Feature: domain Description: RVT_N Location: 21 38440-21 38686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2138728-2139400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 38728-21 39400 bp Feature: domain Description: GIIM Note: maturase Location: 2139511-2139730 bp Feature: domain Description: GIIM Note: maturase Location: 21 3951 1 -21 39730 bp Feature: domain Description: HNH Note: nucleases Location: 2139955-2140090 bp Feature: domain Description: HNH Note: nucleases Location: 21 39955-21 40090 bp Feature: gene Location: 2140505-2140732 bp Feature: gene Location: 2140901-2141725 bp Feature: domain Description: argS Location: 2140973-2141111 bp Feature: domain Description: argS Location: 21 40973-21 41 1 1 1 bp Feature: domain Description: DALR_1 Location: 2141294-2141714 bp Feature: domain Description: DALR_1 Location: 21 41 294-21 41 71 4 bp Feature: gene Location: 2772248-2772787 bp Feature: domain Description: TPR Location: 2772281-2772473 bp Feature: domain Description: TPR Location: 2772281 -2772473 bp Feature: gene Location: 2772800-2772943 bp Feature: domain Description: PRK07459 Location: 2772806-2772929 bp Feature: domain Description: PRK07459 Location: 2772806-2772929 bp Feature: gene Location: 2773127-2774878 bp Feature: domain Description: RVT_N Location: 2773160-2773406 bp Feature: domain Description: RVT_N Location: 27731 60-2773406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2773448-2774114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2773448-27741 1 4 bp Feature: domain Description: GIIM Note: maturase Location: 2774219-2774453 bp Feature: domain Description: GIIM Note: maturase Location: 277421 9-2774453 bp Feature: domain Description: McrA Location: 2774501-2774795 bp Feature: domain Description: McrA Location: 2774501 -2774795 bp Feature: gene Location: 2775125-2775349 bp Feature: gene Location: 2775501-2775644 bp Feature: domain Description: PRK07459 Location: 2775570-2775636 bp Feature: domain Description: PRK07459 Location: 2775570-2775636 bp Feature: gene Location: 3097130-3097453 bp Feature: domain Description: VapI Location: 3097136-3097382 bp Feature: domain Description: VapI Location: 30971 36-3097382 bp Feature: gene Location: 3097511-3098092 bp Feature: domain Description: Uma2 Location: 3097538-3098090 bp Feature: domain Description: Uma2 Location: 3097538-3098090 bp Feature: gene Location: 3098525-3100351 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3098999-3099497 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 3098999-3099497 bp Feature: gene Location: 3100642-3100932 bp Feature: domain Description: HigB Location: 3100657-3100930 bp Feature: domain Description: HigB Location: 31 00657-31 00930 bp Feature: gene Location: 3100947-3101270 bp Feature: domain Description: VapI Location: 3100956-3101196 bp Feature: domain Description: VapI Location: 31 00956-31 01 1 96 bp Feature: gene Location: 3279983-3280171 bp Feature: gene Location: 3280270-3281349 bp Feature: domain Description: FruBisAldo_II_B Location: 3280279-3281317 bp Feature: domain Description: FruBisAldo_II_B Location: 3280279-3281 31 7 bp Feature: gene Location: 3281481-3283235 bp Feature: domain Description: RVT_N Location: 3281538-3281784 bp Feature: domain Description: RVT_N Location: 3281 538-3281 784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3281826-3282492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3281 826-3282492 bp Feature: domain Description: GIIM Note: maturase Location: 3282600-3282825 bp Feature: domain Description: GIIM Note: maturase Location: 3282600-3282825 bp Feature: domain Description: HNHc Note: nucleases Location: 3283017-3283173 bp Feature: domain Description: HNHc Note: nucleases Location: 328301 7-32831 73 bp Feature: gene Location: 3284287-3285798 bp Feature: domain Description: EVE Location: 3284293-3284704 bp Feature: domain Description: EVE Location: 3284293-3284704 bp Feature: domain Description: DUF262 Location: 3284866-3285271 bp Feature: domain Description: DUF262 Location: 3284866-3285271 bp Feature: gene Location: 3285860-3286402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), DEDDh (cd06127), RVT-UG25, NrdF (COG0208), HNH_3 (pfam13392), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), TPR (smart00028)
TPR_1 (pfam00515), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, HicB (pfam05534), Uma2 (pfam05685), secD (TIGR01129), odpB (CHL00144), RVT-UG14, ZnuC (COG1121)
SMC_prok_B (TIGR02168), Smc (COG1196), Crp (pfam00325), HNH (pfam01844), argS (TIGR00456), DALR_1 (smart00836), PRK07459 (single-stranded DNA-binding protein; Provisional), VapI (COG3093), RVT-UG12, HigB (COG4680)
FruBisAldo_II_B (TIGR01521), HNHc (smart00507), EVE (pfam01878), DUF262 (pfam03235)

Seq: KE734695.1 Planktothrix agardhii NIVA-CYA 15 genomic scaffold scaffold00002, whole genome shotgun sequence (1691494 bp)
Overview 1 RT 1: 19859-26142 bp Neighborhood of RT #1 [19859, 26142] marine_srt_targ lpxB RVT-DGRs Feature: gene Location: 19859-22366 bp Feature: domain Description: marine_srt_targ Location: 20102-21863 bp Feature: domain Description: marine_srt_targ Location: 2 0102 -2 1863 bp Feature: gene Location: 22642-23862 bp Feature: domain Description: lpxB Location: 22666-23833 bp Feature: domain Description: lpxB Location: 2 2 666-2 3833 bp Feature: gene Location: 24219-25313 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24465-25104 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 4465-2 5104 bp Feature: gene Location: 25642-25893 bp Feature: gene Location: 25909-26142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT marine_srt_targ (TIGR03788), lpxB (TIGR00215), RVT-DGRs

Seq: KE734696.1 Planktothrix agardhii NIVA-CYA 15 genomic scaffold scaffold00003, whole genome shotgun sequence (435718 bp)
Overview 1 RT 1: 231789-239344 bp Neighborhood of RT #1 [231789, 239427] STKc_PknB_like TPR TPR_1 TPR TPR_1 TPR RVT_N RVT-GII GIIM McrA PRK00174 MASE1 Feature: gene Location: 231789-233978 bp Feature: domain Description: STKc_PknB_like Location: 231822-232620 bp Feature: domain Description: STKc_PknB_like Location: 23 1822-23 2620 bp Feature: domain Description: TPR Location: 232821-233088 bp Feature: domain Description: TPR Location: 23 2821-23 3 088 bp Feature: domain Description: TPR_1 Location: 233109-233202 bp Feature: domain Description: TPR_1 Location: 23 3 109-23 3 202 bp Feature: domain Description: TPR Location: 233211-233493 bp Feature: domain Description: TPR Location: 23 3 211-23 3 493 bp Feature: domain Description: TPR_1 Location: 233517-233604 bp Feature: domain Description: TPR_1 Location: 23 3 517-23 3 604 bp Feature: domain Description: TPR Location: 233652-233895 bp Feature: domain Description: TPR Location: 23 3 652-23 3 895 bp Feature: gene Location: 234116-234247 bp Feature: gene Location: 234901-236679 bp Feature: domain Description: RVT_N Location: 234940-235186 bp Feature: domain Description: RVT_N Location: 23 4940-23 5186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235294-235933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 5294-23 593 3 bp Feature: domain Description: GIIM Note: maturase Location: 236032-236233 bp Feature: domain Description: GIIM Note: maturase Location: 23 603 2-23 623 3 bp Feature: domain Description: McrA Location: 236320-236611 bp Feature: domain Description: McrA Location: 23 63 20-23 6611 bp Feature: gene Location: 237049-238638 bp Feature: domain Description: PRK00174 Location: 237052-238627 bp Feature: domain Description: PRK00174 Location: 23 7052-23 8627 bp Feature: gene Location: 238918-239427 bp Feature: domain Description: MASE1 Location: 238960-239344 bp Feature: domain Description: MASE1 Location: 23 8960-23 93 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), TPR (smart00028), TPR_1 (pfam00515), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK00174 (acetyl-CoA synthetase; Provisional), MASE1 (pfam05231)