myRT

myRT report for GCA_000464725.1_NC34_1

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Seq: AVFT01000006.1 Planktothrix agardhii NIVA-CYA 34 contig00006, whole genome shotgun sequence (132886 bp)
Overview 1 RT 1: 57382-60464 bp Neighborhood of RT #1 [57382, 60778] PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 TPR Feature: gene Location: 57382-57525 bp Feature: domain Description: PRK07459 Location: 57451-57517 bp Feature: domain Description: PRK07459 Location: 57451 -5751 7 bp Feature: gene Location: 57677-57901 bp Feature: gene Location: 58148-59899 bp Feature: domain Description: RVT_N Location: 58181-58427 bp Feature: domain Description: RVT_N Location: 581 81 -58427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58469-59135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58469-591 35 bp Feature: domain Description: GIIM Note: maturase Location: 59240-59474 bp Feature: domain Description: GIIM Note: maturase Location: 59240-59474 bp Feature: domain Description: McrA Location: 59522-59816 bp Feature: domain Description: McrA Location: 59522-5981 6 bp Feature: gene Location: 60083-60226 bp Feature: domain Description: PRK07459 Location: 60089-60212 bp Feature: domain Description: PRK07459 Location: 60089-6021 2 bp Feature: gene Location: 60239-60778 bp Feature: domain Description: TPR Location: 60272-60464 bp Feature: domain Description: TPR Location: 60272-60464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TPR (smart00028)

Seq: AVFT01000008.1 Planktothrix agardhii NIVA-CYA 34 contig00008, whole genome shotgun sequence (122138 bp)
Overview 1 RT 1: 3843-8435 bp Neighborhood of RT #1 [3843, 8455] NrdF HNH_3 RVT_N RVT-GII GIIM McrA NrdF Feature: gene Location: 3843-4244 bp Feature: domain Description: NrdF Location: 3855-4236 bp Feature: domain Description: NrdF Location: 3855-42 36 bp Feature: gene Location: 4317-5066 bp Feature: domain Description: HNH_3 Location: 4458-4590 bp Feature: domain Description: HNH_3 Location: 4458-4590 bp Feature: gene Location: 5772-7601 bp Feature: domain Description: RVT_N Location: 5874-6120 bp Feature: domain Description: RVT_N Location: 5874-612 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6228-6861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 2 8-6861 bp Feature: domain Description: GIIM Note: maturase Location: 6960-7182 bp Feature: domain Description: GIIM Note: maturase Location: 6960-7182 bp Feature: domain Description: McrA Location: 7245-7539 bp Feature: domain Description: McrA Location: 72 45-7539 bp Feature: gene Location: 7903-8097 bp Feature: gene Location: 8129-8455 bp Feature: domain Description: NrdF Location: 8135-8435 bp Feature: domain Description: NrdF Location: 8135-8435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NrdF (COG0208), HNH_3 (pfam13392), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AVFT01000021.1 Planktothrix agardhii NIVA-CYA 34 contig00035, whole genome shotgun sequence (63120 bp)
Overview 1 RT 1: 18194-25272 bp Neighborhood of RT #1 [18194, 25272] RVT-UG25 UvrD DEDDh UvrD Feature: gene Location: 18194-18436 bp Feature: gene Location: 18620-18820 bp Feature: gene Location: 18901-21954 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 20386-20785 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 203 86-20785 bp Feature: gene Location: 21944-24403 bp Feature: domain Description: UvrD Location: 21959-23225 bp Feature: domain Description: UvrD Location: 21959-23 225 bp Feature: domain Description: DEDDh Location: 23336-23798 bp Feature: domain Description: DEDDh Location: 23 3 3 6-23 798 bp Feature: domain Description: UvrD Location: 23867-24386 bp Feature: domain Description: UvrD Location: 23 867-243 86 bp Feature: gene Location: 24775-25272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG25, UvrD (COG0210), DEDDh (cd06127)

Seq: AVFT01000028.1 Planktothrix agardhii NIVA-CYA 34 contig00044, whole genome shotgun sequence (57692 bp)
Overview 1 RT 1: 12705-18377 bp Neighborhood of RT #1 [12705, 18385] DUF4926 RVT-GII GIIM HNHc RVT_N RVT_N RVT-GII GIIM McrA ParE_toxin Feature: gene Location: 12705-12968 bp Feature: domain Description: DUF4926 Location: 12726-12939 bp Feature: domain Description: DUF4 926 Location: 12726-12939 bp Feature: gene Location: 12965-13183 bp Feature: gene Location: 13363-14709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13366-13969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13366-13969 bp Feature: domain Description: GIIM Note: maturase Location: 14068-14290 bp Feature: domain Description: GIIM Note: maturase Location: 14 068-14 290 bp Feature: domain Description: HNHc Note: nucleases Location: 14491-14644 bp Feature: domain Description: HNHc Note: nucleases Location: 14 4 91-14 64 4 bp Feature: gene Location: 14833-15099 bp Feature: domain Description: RVT_N Location: 14869-15097 bp Feature: domain Description: RVT_N Location: 14 869-15097 bp Feature: gene Location: 15221-17050 bp Feature: domain Description: RVT_N Location: 15323-15569 bp Feature: domain Description: RVT_N Location: 15323-15569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15677-16310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15677-16310 bp Feature: domain Description: GIIM Note: maturase Location: 16412-16610 bp Feature: domain Description: GIIM Note: maturase Location: 164 12-16610 bp Feature: domain Description: McrA Location: 16715-16988 bp Feature: domain Description: McrA Location: 16715-16988 bp Feature: gene Location: 17379-17507 bp Feature: gene Location: 18107-18385 bp Feature: domain Description: ParE_toxin Location: 18116-18377 bp Feature: domain Description: ParE_toxin Location: 18116-18377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4926 (pfam16277), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), McrA (COG4058), ParE_toxin (pfam05016)

Seq: AVFT01000036.1 Planktothrix agardhii NIVA-CYA 34 contig00059, whole genome shotgun sequence (48007 bp)
Overview 1 RT 1: 3-4078 bp Neighborhood of RT #1 [3, 4161] RVT-GII GIIM McrA PRK00174 MASE1 Feature: gene Location: 3-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-660 bp Feature: domain Description: GIIM Note: maturase Location: 759-960 bp Feature: domain Description: GIIM Note: maturase Location: 75 9-960 bp Feature: domain Description: McrA Location: 1047-1338 bp Feature: domain Description: McrA Location: 1047-1338 bp Feature: gene Location: 1776-3365 bp Feature: domain Description: PRK00174 Location: 1779-3354 bp Feature: domain Description: PRK00174 Location: 1779-335 4 bp Feature: gene Location: 3652-4161 bp Feature: domain Description: MASE1 Location: 3694-4078 bp Feature: domain Description: MASE1 Location: 3694-4078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK00174 (acetyl-CoA synthetase; Provisional), MASE1 (pfam05231)

Seq: AVFT01000100.1 Planktothrix agardhii NIVA-CYA 34 contig00159, whole genome shotgun sequence (18780 bp)
Overview 1 RT 1: 1577-5643 bp Neighborhood of RT #1 [1577, 5717] VapI Uma2 RVT-UG12 HigB VapI Feature: gene Location: 1577-1900 bp Feature: domain Description: VapI Location: 1583-1826 bp Feature: domain Description: VapI Location: 1583-1826 bp Feature: gene Location: 1958-2533 bp Feature: domain Description: Uma2 Location: 1979-2531 bp Feature: domain Description: Uma2 Location: 1979-2531 bp Feature: gene Location: 2972-4798 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3446-3944 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3446 -3944 bp Feature: gene Location: 5089-5379 bp Feature: domain Description: HigB Location: 5104-5377 bp Feature: domain Description: HigB Location: 5104-5377 bp Feature: gene Location: 5394-5717 bp Feature: domain Description: VapI Location: 5403-5643 bp Feature: domain Description: VapI Location: 5403-56 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VapI (COG3093), Uma2 (pfam05685), RVT-UG12, HigB (COG4680)

Seq: AVFT01000190.1 Planktothrix agardhii NIVA-CYA 34 contig00673, whole genome shotgun sequence (2396 bp)
Overview 1 RT 1: 112-2181 bp Neighborhood of RT #1 [112, 2181] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 112-1785 bp Feature: domain Description: RVT_N Location: 166-412 bp Feature: domain Description: RVT_N Location: 166-412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1111 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: HNHc Note: nucleases Location: 1618-1780 bp Feature: domain Description: HNHc Note: nucleases Location: 1618-17 80 bp Feature: gene Location: 2050-2181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)