myRT

myRT report for GCA_000464745.1_NC405_1

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Seq: KE734704.1 Planktothrix mougeotii NIVA-CYA 405 genomic scaffold scaffold00001, whole genome shotgun sequence (2412716 bp)
Overview 1 RT 1: 247127-251193 bp 2 RT 2: 574818-577900 bp 3 RT 3: 1748019-1753691 bp Neighborhood of RT #1 [247127, 251267] VapI HigB RVT-UG12 Uma2 VapI Neighborhood of RT #2 [574818, 578214] PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 TPR Neighborhood of RT #3 [1748019, 1753699] DUF4926 RVT-GII GIIM HNHc RVT_N RVT_N RVT-GII GIIM McrA ParE_toxin Feature: gene Location: 247127-247450 bp Feature: domain Description: VapI Location: 247136-247376 bp Feature: domain Description: VapI Location: 2471 36-247376 bp Feature: gene Location: 247465-247755 bp Feature: domain Description: HigB Location: 247480-247753 bp Feature: domain Description: HigB Location: 247480-247753 bp Feature: gene Location: 248046-249872 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 248520-249018 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 248520-24901 8 bp Feature: gene Location: 250311-250886 bp Feature: domain Description: Uma2 Location: 250332-250884 bp Feature: domain Description: Uma2 Location: 250332-250884 bp Feature: gene Location: 250944-251267 bp Feature: domain Description: VapI Location: 250950-251193 bp Feature: domain Description: VapI Location: 250950-251 1 93 bp Feature: gene Location: 574818-574961 bp Feature: domain Description: PRK07459 Location: 574887-574953 bp Feature: domain Description: PRK07459 Location: 574887-574953 bp Feature: gene Location: 575113-575337 bp Feature: gene Location: 575584-577335 bp Feature: domain Description: RVT_N Location: 575617-575863 bp Feature: domain Description: RVT_N Location: 57561 7-575863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575905-576571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575905-576571 bp Feature: domain Description: GIIM Note: maturase Location: 576676-576910 bp Feature: domain Description: GIIM Note: maturase Location: 576676-57691 0 bp Feature: domain Description: McrA Location: 576958-577252 bp Feature: domain Description: McrA Location: 576958-577252 bp Feature: gene Location: 577519-577662 bp Feature: domain Description: PRK07459 Location: 577525-577648 bp Feature: domain Description: PRK07459 Location: 577525-577648 bp Feature: gene Location: 577675-578214 bp Feature: domain Description: TPR Location: 577708-577900 bp Feature: domain Description: TPR Location: 577708-577900 bp Feature: gene Location: 1748019-1748282 bp Feature: domain Description: DUF4926 Location: 1748040-1748253 bp Feature: domain Description: DUF4926 Location: 1 748040-1 748253 bp Feature: gene Location: 1748279-1748497 bp Feature: gene Location: 1748677-1750023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748680-1749283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 748680-1 749283 bp Feature: domain Description: GIIM Note: maturase Location: 1749382-1749604 bp Feature: domain Description: GIIM Note: maturase Location: 1 749382-1 749604 bp Feature: domain Description: HNHc Note: nucleases Location: 1749805-1749958 bp Feature: domain Description: HNHc Note: nucleases Location: 1 749805-1 749958 bp Feature: gene Location: 1750147-1750413 bp Feature: domain Description: RVT_N Location: 1750183-1750411 bp Feature: domain Description: RVT_N Location: 1 7501 83-1 75041 1 bp Feature: gene Location: 1750535-1752364 bp Feature: domain Description: RVT_N Location: 1750637-1750883 bp Feature: domain Description: RVT_N Location: 1 750637-1 750883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750991-1751624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 750991 -1 751 624 bp Feature: domain Description: GIIM Note: maturase Location: 1751726-1751924 bp Feature: domain Description: GIIM Note: maturase Location: 1 751 726-1 751 924 bp Feature: domain Description: McrA Location: 1752029-1752302 bp Feature: domain Description: McrA Location: 1 752029-1 752302 bp Feature: gene Location: 1752693-1752821 bp Feature: gene Location: 1753421-1753699 bp Feature: domain Description: ParE_toxin Location: 1753430-1753691 bp Feature: domain Description: ParE_toxin Location: 1 753430-1 753691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VapI (COG3093), HigB (COG4680), RVT-UG12, Uma2 (pfam05685), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TPR (smart00028)
DUF4926 (pfam16277), HNHc (smart00507), ParE_toxin (pfam05016)

Seq: KE734706.1 Planktothrix mougeotii NIVA-CYA 405 genomic scaffold scaffold00003, whole genome shotgun sequence (537235 bp)
Overview 1 RT 1: 17819-22411 bp Neighborhood of RT #1 [17819, 22431] NrdF HNH_3 RVT_N RVT-GII GIIM McrA NrdF Feature: gene Location: 17819-18220 bp Feature: domain Description: NrdF Location: 17831-18212 bp Feature: domain Description: NrdF Location: 17831-182 12 bp Feature: gene Location: 18293-19042 bp Feature: domain Description: HNH_3 Location: 18434-18566 bp Feature: domain Description: HNH_3 Location: 18434-18566 bp Feature: gene Location: 19748-21577 bp Feature: domain Description: RVT_N Location: 19850-20096 bp Feature: domain Description: RVT_N Location: 19850-2 0096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20204-20837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 04-2 0837 bp Feature: domain Description: GIIM Note: maturase Location: 20936-21158 bp Feature: domain Description: GIIM Note: maturase Location: 2 0936-2 1158 bp Feature: domain Description: McrA Location: 21221-21515 bp Feature: domain Description: McrA Location: 2 12 2 1-2 1515 bp Feature: gene Location: 21879-22073 bp Feature: gene Location: 22105-22431 bp Feature: domain Description: NrdF Location: 22111-22411 bp Feature: domain Description: NrdF Location: 2 2 111-2 2 411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NrdF (COG0208), HNH_3 (pfam13392), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: KE734707.1 Planktothrix mougeotii NIVA-CYA 405 genomic scaffold scaffold00004, whole genome shotgun sequence (523114 bp)
Overview 1 RT 1: 305880-313442 bp Neighborhood of RT #1 [305880, 313525] STKc_PknB_like TPR TPR_1 TPR TPR_1 TPR RVT_N RVT-GII GIIM McrA PRK00174 MASE1 Feature: gene Location: 305880-308069 bp Feature: domain Description: STKc_PknB_like Location: 305913-306711 bp Feature: domain Description: STKc_PknB_like Location: 3 05913 -3 06711 bp Feature: domain Description: TPR Location: 306912-307179 bp Feature: domain Description: TPR Location: 3 06912-3 07179 bp Feature: domain Description: TPR_1 Location: 307200-307293 bp Feature: domain Description: TPR_1 Location: 3 07200-3 07293 bp Feature: domain Description: TPR Location: 307302-307584 bp Feature: domain Description: TPR Location: 3 073 02-3 07584 bp Feature: domain Description: TPR_1 Location: 307608-307695 bp Feature: domain Description: TPR_1 Location: 3 07608-3 07695 bp Feature: domain Description: TPR Location: 307710-307986 bp Feature: domain Description: TPR Location: 3 07710-3 07986 bp Feature: gene Location: 308207-308338 bp Feature: gene Location: 308992-310770 bp Feature: domain Description: RVT_N Location: 309031-309277 bp Feature: domain Description: RVT_N Location: 3 0903 1-3 09277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309385-310024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 093 85-3 10024 bp Feature: domain Description: GIIM Note: maturase Location: 310123-310324 bp Feature: domain Description: GIIM Note: maturase Location: 3 10123 -3 103 24 bp Feature: domain Description: McrA Location: 310411-310702 bp Feature: domain Description: McrA Location: 3 10411-3 10702 bp Feature: gene Location: 311140-312729 bp Feature: domain Description: PRK00174 Location: 311143-312718 bp Feature: domain Description: PRK00174 Location: 3 11143 -3 12718 bp Feature: gene Location: 313016-313525 bp Feature: domain Description: MASE1 Location: 313058-313442 bp Feature: domain Description: MASE1 Location: 3 13 058-3 13 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), TPR (smart00028), TPR_1 (pfam00515), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK00174 (acetyl-CoA synthetase; Provisional), MASE1 (pfam05231)

Seq: KE734708.1 Planktothrix mougeotii NIVA-CYA 405 genomic scaffold scaffold00005, whole genome shotgun sequence (193210 bp)
Overview 1 RT 1: 110027-117105 bp Neighborhood of RT #1 [110027, 117105] UvrD DEDDh UvrD RVT-UG25 Feature: gene Location: 110027-110524 bp Feature: gene Location: 110896-113355 bp Feature: domain Description: UvrD Location: 110911-112177 bp Feature: domain Description: UvrD Location: 110911-112177 bp Feature: domain Description: DEDDh Location: 112288-112750 bp Feature: domain Description: DEDDh Location: 112288-112750 bp Feature: domain Description: UvrD Location: 112819-113338 bp Feature: domain Description: UvrD Location: 112819-113338 bp Feature: gene Location: 113345-116398 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 114830-115229 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 114 830-115229 bp Feature: gene Location: 116479-116679 bp Feature: gene Location: 116863-117105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), DEDDh (cd06127), RVT-UG25

Seq: KE734709.1 Planktothrix mougeotii NIVA-CYA 405 genomic scaffold scaffold00006, whole genome shotgun sequence (68611 bp)
Overview 1 RT 1: 20040-27345 bp Neighborhood of RT #1 [20040, 27345] RVT_N RVT-GII GIIM HNHc Phage_integrase Feature: gene Location: 20040-20222 bp Feature: gene Location: 20305-20484 bp Feature: gene Location: 21130-22803 bp Feature: domain Description: RVT_N Location: 21184-21430 bp Feature: domain Description: RVT_N Location: 21184-21430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21478-22129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21478-22129 bp Feature: domain Description: GIIM Note: maturase Location: 22180-22414 bp Feature: domain Description: GIIM Note: maturase Location: 22180-22414 bp Feature: domain Description: HNHc Note: nucleases Location: 22636-22798 bp Feature: domain Description: HNHc Note: nucleases Location: 22636-22798 bp Feature: gene Location: 23013-23699 bp Feature: domain Description: Phage_integrase Location: 23058-23565 bp Feature: domain Description: Phage_integrase Location: 2305 8-235 65 bp Feature: gene Location: 23749-27345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Phage_integrase (pfam00589)