myRT

myRT report for GCA_000464785.1_NC407_1

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Seq: KE734717.1 Planktothrix rubescens NIVA-CYA 407 genomic scaffold scaffold00001, whole genome shotgun sequence (3157393 bp)
Overview 1 RT 1: 203143-208038 bp 2 RT 2: 730534-734591 bp 3 RT 3: 1971254-1973797 bp 4 RT 4: 2020112-2028179 bp 5 RT 5: 2635312-2641111 bp 6 RT 6: 2673219-2676604 bp Neighborhood of RT #1 [203143, 208038] PRK00174 RVT-GII GIIM McrA RVT_N Neighborhood of RT #2 [730534, 734591] NrdF HNH_3 RVT-GII GIIM McrA RVT_N Neighborhood of RT #3 [1971254, 1973865] RimL heterocyst_DevA RVT_N RVT-GII GIIM McrA Neighborhood of RT #4 [2020112, 2028442] SMC_prok_B Smc Crp RVT-GII GIIM HNH RVT_N RVT-GII RVT-GII GIIM McrA argS DALR_1 RHH_1 Neighborhood of RT #5 [2635312, 2641155] TPR TPR_14 DUF3531 RVT_N RVT-GII GIIM McrA obgE YgcG Neighborhood of RT #6 [2673219, 2676612] TPR PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 Feature: gene Location: 203143-203289 bp Feature: gene Location: 203517-205106 bp Feature: domain Description: PRK00174 Location: 203520-205095 bp Feature: domain Description: PRK001 74 Location: 203520-205095 bp Feature: gene Location: 205476-206723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205488-205977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205488-205977 bp Feature: domain Description: GIIM Note: maturase Location: 206076-206277 bp Feature: domain Description: GIIM Note: maturase Location: 206076-206277 bp Feature: domain Description: McrA Location: 206364-206655 bp Feature: domain Description: McrA Location: 206364-206655 bp Feature: gene Location: 206825-207253 bp Feature: RT Description: RVT_N Location: 206864-207110 bp Feature: RT Description: RVT_N Location: 206864-2071 1 0 bp Feature: gene Location: 207907-208038 bp Feature: gene Location: 730534-730935 bp Feature: domain Description: NrdF Location: 730546-730927 bp Feature: domain Description: NrdF Location: 730546-730927 bp Feature: gene Location: 731232-731561 bp Feature: domain Description: HNH_3 Location: 731373-731505 bp Feature: domain Description: HNH_3 Location: 731 373-731 505 bp Feature: gene Location: 732267-733472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732270-732732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732270-732732 bp Feature: domain Description: GIIM Note: maturase Location: 732831-733053 bp Feature: domain Description: GIIM Note: maturase Location: 732831 -733053 bp Feature: domain Description: McrA Location: 733116-733410 bp Feature: domain Description: McrA Location: 7331 1 6-73341 0 bp Feature: gene Location: 733604-734032 bp Feature: RT Description: RVT_N Location: 733643-733889 bp Feature: RT Description: RVT_N Location: 733643-733889 bp Feature: gene Location: 734397-734591 bp Feature: gene Location: 1971254-1971859 bp Feature: domain Description: RimL Location: 1971269-1971833 bp Feature: domain Description: RimL Location: 1 971 269-1 971 833 bp Feature: gene Location: 1971875-1972048 bp Feature: domain Description: heterocyst_DevA Location: 1971929-1972022 bp Feature: domain Description: heterocyst_DevA Location: 1 971 929-1 972022 bp Feature: gene Location: 1972126-1973865 bp Feature: RT Description: RVT_N Location: 1972168-1972414 bp Feature: RT Description: RVT_N Location: 1 9721 68-1 97241 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972456-1973125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 972456-1 9731 25 bp Feature: domain Description: GIIM Note: maturase Location: 1973224-1973425 bp Feature: domain Description: GIIM Note: maturase Location: 1 973224-1 973425 bp Feature: domain Description: McrA Location: 1973527-1973797 bp Feature: domain Description: McrA Location: 1 973527-1 973797 bp Feature: gene Location: 2020112-2021851 bp Feature: domain Description: SMC_prok_B Location: 2020250-2021060 bp Feature: domain Description: SMC_prok_B Location: 2020250-2021 060 bp Feature: domain Description: Smc Location: 2021474-2021831 bp Feature: domain Description: Smc Location: 2021 474-2021 831 bp Feature: gene Location: 2021901-2022662 bp Feature: domain Description: Crp Location: 2022147-2022591 bp Feature: domain Description: Crp Location: 20221 47-2022591 bp Feature: gene Location: 2023005-2024006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023038-2023266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023038-2023266 bp Feature: domain Description: GIIM Note: maturase Location: 2023371-2023602 bp Feature: domain Description: GIIM Note: maturase Location: 2023371 -2023602 bp Feature: domain Description: HNH Note: nucleases Location: 2023815-2023950 bp Feature: domain Description: HNH Note: nucleases Location: 202381 5-2023950 bp Feature: gene Location: 2024408-2026018 bp Feature: RT Description: RVT_N Location: 2024447-2024693 bp Feature: RT Description: RVT_N Location: 2024447-2024693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024735-2025083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024735-2025083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2025083-2025278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2025083-2025278 bp Feature: domain Description: GIIM Note: maturase Location: 2025380-2025578 bp Feature: domain Description: GIIM Note: maturase Location: 2025380-2025578 bp Feature: domain Description: McrA Location: 2025683-2025956 bp Feature: domain Description: McrA Location: 2025683-2025956 bp Feature: gene Location: 2027201-2028025 bp Feature: domain Description: argS Location: 2027270-2027411 bp Feature: domain Description: argS Location: 2027270-202741 1 bp Feature: domain Description: DALR_1 Location: 2027594-2028014 bp Feature: domain Description: DALR_1 Location: 2027594-202801 4 bp Feature: gene Location: 2028044-2028442 bp Feature: domain Description: RHH_1 Location: 2028068-2028179 bp Feature: domain Description: RHH_1 Location: 2028068-20281 79 bp Feature: gene Location: 2635312-2636343 bp Feature: domain Description: TPR Location: 2635495-2635933 bp Feature: domain Description: TPR Location: 2635495-2635933 bp Feature: domain Description: TPR_14 Location: 2635969-2636080 bp Feature: domain Description: TPR_1 4 Location: 2635969-2636080 bp Feature: gene Location: 2636353-2636805 bp Feature: domain Description: DUF3531 Location: 2636356-2636770 bp Feature: domain Description: DUF3531 Location: 2636356-2636770 bp Feature: gene Location: 2637211-2638950 bp Feature: RT Description: RVT_N Location: 2637253-2637499 bp Feature: RT Description: RVT_N Location: 2637253-2637499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637541-2638210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637541 -263821 0 bp Feature: domain Description: GIIM Note: maturase Location: 2638309-2638510 bp Feature: domain Description: GIIM Note: maturase Location: 2638309-263851 0 bp Feature: domain Description: McrA Location: 2638612-2638882 bp Feature: domain Description: McrA Location: 263861 2-2638882 bp Feature: gene Location: 2639277-2640335 bp Feature: domain Description: obgE Location: 2639283-2640288 bp Feature: domain Description: obgE Location: 2639283-2640288 bp Feature: gene Location: 2640433-2641155 bp Feature: domain Description: YgcG Location: 2640511-2641111 bp Feature: domain Description: YgcG Location: 264051 1 -2641 1 1 1 bp Feature: gene Location: 2673219-2673758 bp Feature: domain Description: TPR Location: 2673252-2673444 bp Feature: domain Description: TPR Location: 2673252-2673444 bp Feature: gene Location: 2673771-2673911 bp Feature: domain Description: PRK07459 Location: 2673777-2673888 bp Feature: domain Description: PRK07459 Location: 2673777-2673888 bp Feature: gene Location: 2674095-2675846 bp Feature: RT Description: RVT_N Location: 2674128-2674374 bp Feature: RT Description: RVT_N Location: 26741 28-2674374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2674416-2675082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267441 6-2675082 bp Feature: domain Description: GIIM Note: maturase Location: 2675187-2675421 bp Feature: domain Description: GIIM Note: maturase Location: 26751 87-2675421 bp Feature: domain Description: McrA Location: 2675469-2675763 bp Feature: domain Description: McrA Location: 2675469-2675763 bp Feature: gene Location: 2676093-2676317 bp Feature: gene Location: 2676469-2676612 bp Feature: domain Description: PRK07459 Location: 2676538-2676604 bp Feature: domain Description: PRK07459 Location: 2676538-2676604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00174 (acetyl-CoA synthetase; Provisional), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), NrdF (COG0208), HNH_3 (pfam13392), RimL (COG1670), heterocyst_DevA (TIGR02982), SMC_prok_B (TIGR02168)
Smc (COG1196), Crp (pfam00325), HNH (pfam01844), argS (TIGR00456), DALR_1 (smart00836), RHH_1 (pfam01402), TPR (smart00028), TPR_14 (pfam13428), DUF3531 (pfam12049), obgE (PRK12299)
YgcG (COG1512), PRK07459 (single-stranded DNA-binding protein; Provisional)

Seq: KE734718.1 Planktothrix rubescens NIVA-CYA 407 genomic scaffold scaffold00002, whole genome shotgun sequence (2237148 bp)
Overview 1 RT 1: 1054359-1058104 bp 2 RT 2: 1487150-1491904 bp 3 RT 3: 1733613-1740806 bp Neighborhood of RT #1 [1054359, 1058104] PRC PRC InsQ RVT-GII GIIM Neighborhood of RT #2 [1487150, 1491966] glyQ Uma2 RVT_N RVT-GII RVT-GII GIIM McrA Neighborhood of RT #3 [1733613, 1740886] InsQ TlcC HEAT_2 HEAT_2 HEAT_2 RVT_N RVT-GII GIIM Crp YneE Feature: gene Location: 1054359-1055360 bp Feature: domain Description: PRC Location: 1054383-1054590 bp Feature: domain Description: PRC Location: 1054383-1054590 bp Feature: domain Description: PRC Location: 1054617-1054848 bp Feature: domain Description: PRC Location: 1054617-1054848 bp Feature: gene Location: 1055378-1056109 bp Feature: domain Description: InsQ Location: 1055396-1056017 bp Feature: domain Description: InsQ Location: 1055396-1056017 bp Feature: gene Location: 1056285-1057175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056288-1056882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10562 88-1056882 bp Feature: domain Description: GIIM Note: maturase Location: 1056993-1057119 bp Feature: domain Description: GIIM Note: maturase Location: 1056993-1057119 bp Feature: gene Location: 1057425-1057793 bp Feature: gene Location: 1057907-1058104 bp Feature: gene Location: 1487150-1488079 bp Feature: domain Description: glyQ Location: 1487204-1488062 bp Feature: domain Description: glyQ Location: 14872 04-1488062 bp Feature: gene Location: 1488290-1488844 bp Feature: domain Description: Uma2 Location: 1488323-1488812 bp Feature: domain Description: Uma2 Location: 148832 3-1488812 bp Feature: gene Location: 1490356-1491966 bp Feature: RT Description: RVT_N Location: 1490395-1490641 bp Feature: RT Description: RVT_N Location: 1490395-1490641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1490683-1491031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1490683-1491031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491031-1491226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491031-14912 2 6 bp Feature: domain Description: GIIM Note: maturase Location: 1491328-1491526 bp Feature: domain Description: GIIM Note: maturase Location: 149132 8-149152 6 bp Feature: domain Description: McrA Location: 1491631-1491904 bp Feature: domain Description: McrA Location: 1491631-1491904 bp Feature: gene Location: 1733613-1734005 bp Feature: domain Description: InsQ Location: 1733628-1733730 bp Feature: domain Description: InsQ Location: 173362 8-1733730 bp Feature: gene Location: 1734262-1737306 bp Feature: domain Description: TlcC Location: 1734712-1735642 bp Feature: domain Description: TlcC Location: 1734712 -1735642 bp Feature: domain Description: HEAT_2 Location: 1736128-1736296 bp Feature: domain Description: HEAT_2 Location: 173612 8-17362 96 bp Feature: domain Description: HEAT_2 Location: 1736302-1736473 bp Feature: domain Description: HEAT_2 Location: 1736302 -1736473 bp Feature: domain Description: HEAT_2 Location: 1737166-1737280 bp Feature: domain Description: HEAT_2 Location: 1737166-17372 80 bp Feature: gene Location: 1737953-1739269 bp Feature: RT Description: RVT_N Location: 1737995-1738241 bp Feature: RT Description: RVT_N Location: 1737995-17382 41 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738283-1738952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17382 83-1738952 bp Feature: domain Description: GIIM Note: maturase Location: 1739054-1739252 bp Feature: domain Description: GIIM Note: maturase Location: 1739054-17392 52 bp Feature: gene Location: 1739384-1739869 bp Feature: domain Description: Crp Location: 1739420-1739798 bp Feature: domain Description: Crp Location: 173942 0-1739798 bp Feature: gene Location: 1739915-1740886 bp Feature: domain Description: YneE Location: 1739930-1740806 bp Feature: domain Description: YneE Location: 1739930-1740806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRC (pfam05239), InsQ (COG0675), RVT-GII, GIIM (pfam08388), glyQ (TIGR00388), Uma2 (pfam05685), RVT_N (pfam13655), McrA (COG4058), TlcC (COG3202), HEAT_2 (pfam13646)
Crp (pfam00325), YneE (COG3781)