myRT

myRT report for GCA_000464805.1_NC540_1

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Seq: KE734720.1 Planktothrix prolifica NIVA-CYA 540 genomic scaffold scaffold00001, whole genome shotgun sequence (5502793 bp)
Overview 1 RT 1: 248838-252904 bp 2 RT 2: 385673-389060 bp 3 RT 3: 1078071-1082659 bp 4 RT 4: 1780147-1784948 bp 5 RT 5: 2972434-2977036 bp 6 RT 6: 3085775-3092852 bp 7 RT 7: 3519673-3525295 bp Neighborhood of RT #1 [248838, 252978] VapI HigB RVT-UG12 Uma2 VapI Neighborhood of RT #2 [385673, 389068] TPR PRK07459 RVT_N RVT-GII GIIM McrA PRK07459 Neighborhood of RT #3 [1078071, 1082659] EF-Tu RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [1780147, 1784948] DUF4926 RVT-GII GIIM HNHc RVT_N RVT-GII GIIM McrA RVT_N Neighborhood of RT #5 [2972434, 2977044] NrdF RVT_N RVT-GII GIIM McrA HNH_3 NrdF Neighborhood of RT #6 [3085775, 3092852] RVT-UG25 UvrD DEDDh UvrD Neighborhood of RT #7 [3519673, 3525318] RVT_N RVT-GII GIIM McrA PRK00174 MASE1 Feature: gene Location: 248838-249161 bp Feature: domain Description: VapI Location: 248847-249087 bp Feature: domain Description: VapI Location: 248847-249087 bp Feature: gene Location: 249176-249466 bp Feature: domain Description: HigB Location: 249191-249464 bp Feature: domain Description: HigB Location: 2491 91 -249464 bp Feature: gene Location: 249757-251583 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 250231-250729 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 250231 -250729 bp Feature: gene Location: 252022-252597 bp Feature: domain Description: Uma2 Location: 252043-252595 bp Feature: domain Description: Uma2 Location: 252043-252595 bp Feature: gene Location: 252655-252978 bp Feature: domain Description: VapI Location: 252661-252904 bp Feature: domain Description: VapI Location: 252661 -252904 bp Feature: gene Location: 385673-386212 bp Feature: domain Description: TPR Location: 385706-385898 bp Feature: domain Description: TPR Location: 385706-385898 bp Feature: gene Location: 386225-386368 bp Feature: domain Description: PRK07459 Location: 386231-386354 bp Feature: domain Description: PRK07459 Location: 386231 -386354 bp Feature: gene Location: 386551-388302 bp Feature: domain Description: RVT_N Location: 386584-386830 bp Feature: domain Description: RVT_N Location: 386584-386830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386872-387538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386872-387538 bp Feature: domain Description: GIIM Note: maturase Location: 387643-387877 bp Feature: domain Description: GIIM Note: maturase Location: 387643-387877 bp Feature: domain Description: McrA Location: 387925-388219 bp Feature: domain Description: McrA Location: 387925-38821 9 bp Feature: gene Location: 388549-388773 bp Feature: gene Location: 388925-389068 bp Feature: domain Description: PRK07459 Location: 388994-389060 bp Feature: domain Description: PRK07459 Location: 388994-389060 bp Feature: gene Location: 1078071-1078301 bp Feature: gene Location: 1078461-1079642 bp Feature: domain Description: EF-Tu Location: 1078467-1079637 bp Feature: domain Description: EF-Tu Location: 1 078467-1 079637 bp Feature: gene Location: 1080000-1081673 bp Feature: domain Description: RVT_N Location: 1080054-1080300 bp Feature: domain Description: RVT_N Location: 1 080054-1 080300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080348-1080999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 080348-1 080999 bp Feature: domain Description: GIIM Note: maturase Location: 1081050-1081284 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 050-1 081 284 bp Feature: domain Description: HNHc Note: nucleases Location: 1081506-1081668 bp Feature: domain Description: HNHc Note: nucleases Location: 1 081 506-1 081 668 bp Feature: gene Location: 1081914-1082069 bp Feature: gene Location: 1082360-1082659 bp Feature: gene Location: 1780147-1780410 bp Feature: domain Description: DUF4926 Location: 1780168-1780381 bp Feature: domain Description: DUF4926 Location: 1 7801 68-1 780381 bp Feature: gene Location: 1780407-1780625 bp Feature: gene Location: 1780805-1782151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780808-1781411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 780808-1 781 41 1 bp Feature: domain Description: GIIM Note: maturase Location: 1781510-1781732 bp Feature: domain Description: GIIM Note: maturase Location: 1 781 51 0-1 781 732 bp Feature: domain Description: HNHc Note: nucleases Location: 1781933-1782086 bp Feature: domain Description: HNHc Note: nucleases Location: 1 781 933-1 782086 bp Feature: gene Location: 1782275-1782541 bp Feature: domain Description: RVT_N Location: 1782311-1782539 bp Feature: domain Description: RVT_N Location: 1 78231 1 -1 782539 bp Feature: gene Location: 1782663-1783751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1782669-1783011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 782669-1 78301 1 bp Feature: domain Description: GIIM Note: maturase Location: 1783113-1783311 bp Feature: domain Description: GIIM Note: maturase Location: 1 7831 1 3-1 78331 1 bp Feature: domain Description: McrA Location: 1783413-1783689 bp Feature: domain Description: McrA Location: 1 78341 3-1 783689 bp Feature: gene Location: 1784000-1784491 bp Feature: domain Description: RVT_N Location: 1784102-1784348 bp Feature: domain Description: RVT_N Location: 1 7841 02-1 784348 bp Feature: gene Location: 1784820-1784948 bp Feature: gene Location: 2972434-2972760 bp Feature: domain Description: NrdF Location: 2972440-2972740 bp Feature: domain Description: NrdF Location: 2972440-2972740 bp Feature: gene Location: 2973288-2973812 bp Feature: domain Description: RVT_N Location: 2973390-2973636 bp Feature: domain Description: RVT_N Location: 2973390-2973636 bp Feature: gene Location: 2974027-2975115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2974033-2974375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2974033-2974375 bp Feature: domain Description: GIIM Note: maturase Location: 2974474-2974696 bp Feature: domain Description: GIIM Note: maturase Location: 2974474-2974696 bp Feature: domain Description: McrA Location: 2974759-2975053 bp Feature: domain Description: McrA Location: 2974759-2975053 bp Feature: gene Location: 2975821-2976570 bp Feature: domain Description: HNH_3 Location: 2975962-2976094 bp Feature: domain Description: HNH_3 Location: 2975962-2976094 bp Feature: gene Location: 2976643-2977044 bp Feature: domain Description: NrdF Location: 2976655-2977036 bp Feature: domain Description: NrdF Location: 2976655-2977036 bp Feature: gene Location: 3085775-3086017 bp Feature: gene Location: 3086201-3086401 bp Feature: gene Location: 3086482-3089535 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3087967-3088366 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3087967-3088366 bp Feature: gene Location: 3089525-3091984 bp Feature: domain Description: UvrD Location: 3089540-3090806 bp Feature: domain Description: UvrD Location: 3089540-3090806 bp Feature: domain Description: DEDDh Location: 3090917-3091379 bp Feature: domain Description: DEDDh Location: 309091 7-3091 379 bp Feature: domain Description: UvrD Location: 3091448-3091967 bp Feature: domain Description: UvrD Location: 3091 448-3091 967 bp Feature: gene Location: 3092355-3092852 bp Feature: gene Location: 3519673-3519804 bp Feature: gene Location: 3520458-3520889 bp Feature: domain Description: RVT_N Location: 3520497-3520743 bp Feature: domain Description: RVT_N Location: 3520497-3520743 bp Feature: gene Location: 3520987-3522234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521005-3521488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521 005-3521 488 bp Feature: domain Description: GIIM Note: maturase Location: 3521587-3521788 bp Feature: domain Description: GIIM Note: maturase Location: 3521 587-3521 788 bp Feature: domain Description: McrA Location: 3521875-3522166 bp Feature: domain Description: McrA Location: 3521 875-35221 66 bp Feature: gene Location: 3522604-3524193 bp Feature: domain Description: PRK00174 Location: 3522607-3524182 bp Feature: domain Description: PRK001 74 Location: 3522607-35241 82 bp Feature: gene Location: 3524473-3525318 bp Feature: domain Description: MASE1 Location: 3524515-3525295 bp Feature: domain Description: MASE1 Location: 352451 5-3525295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VapI (COG3093), HigB (COG4680), RVT-UG12, Uma2 (pfam05685), TPR (smart00028), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)
EF-Tu (TIGR00485), HNHc (smart00507), DUF4926 (pfam16277), NrdF (COG0208), HNH_3 (pfam13392), RVT-UG25, UvrD (COG0210), DEDDh (cd06127), PRK00174 (acetyl-CoA synthetase; Provisional), MASE1 (pfam05231)

Seq: KE734721.1 Planktothrix prolifica NIVA-CYA 540 genomic scaffold scaffold00020, whole genome shotgun sequence (69313 bp)
Overview 1 RT 1: 52950-56475 bp 2 RT 2: 61293-66754 bp Neighborhood of RT #1 [52950, 56609] RVT_N RVT-GII GIIM HNHc Phage_integrase Neighborhood of RT #2 [61293, 68223] HNH_3 RVT_N RVT-GII GIIM HNHc CHAT Feature: gene Location: 52950-53132 bp Feature: gene Location: 53215-53406 bp Feature: gene Location: 53539-55212 bp Feature: domain Description: RVT_N Location: 53593-53839 bp Feature: domain Description: RVT_N Location: 53593-53839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53887-54538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53887-54538 bp Feature: domain Description: GIIM Note: maturase Location: 54589-54823 bp Feature: domain Description: GIIM Note: maturase Location: 54589-5482 3 bp Feature: domain Description: HNHc Note: nucleases Location: 55045-55207 bp Feature: domain Description: HNHc Note: nucleases Location: 55045-552 07 bp Feature: gene Location: 55453-55608 bp Feature: gene Location: 55923-56609 bp Feature: domain Description: Phage_integrase Location: 55968-56475 bp Feature: domain Description: Phage_integrase Location: 55968-56475 bp Feature: gene Location: 61293-61589 bp Feature: domain Description: HNH_3 Location: 61410-61512 bp Feature: domain Description: HNH_3 Location: 61410-61512 bp Feature: gene Location: 61656-61820 bp Feature: gene Location: 62190-63863 bp Feature: domain Description: RVT_N Location: 62244-62490 bp Feature: domain Description: RVT_N Location: 62 2 44-62 490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62538-63189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 538-63189 bp Feature: domain Description: GIIM Note: maturase Location: 63240-63474 bp Feature: domain Description: GIIM Note: maturase Location: 632 40-63474 bp Feature: domain Description: HNHc Note: nucleases Location: 63696-63858 bp Feature: domain Description: HNHc Note: nucleases Location: 63696-63858 bp Feature: gene Location: 64104-64259 bp Feature: gene Location: 64543-68223 bp Feature: domain Description: CHAT Location: 66310-66754 bp Feature: domain Description: CHAT Location: 66310-66754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Phage_integrase (pfam00589), HNH_3 (pfam13392), CHAT (pfam12770)