myRT

myRT report for GCA_000466445.2_ASM46644v2

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Seq: KE992412.1 Clostridium sp. ATCC BAA-442 genomic scaffold Scaffold1892, whole genome shotgun sequence (11491 bp)
Overview 1 RT 1: 838-6085 bp Neighborhood of RT #1 [838, 6150] PRK08279 FACL_like_6 RVT-Retrons TrmO TrmO_C Feature: gene Location: 838-960 bp Feature: gene Location: 970-2403 bp Feature: domain Description: PRK08279 Location: 1000-1258 bp Feature: domain Description: PRK08279 Location: 1 000-1 258 bp Feature: domain Description: FACL_like_6 Location: 1342-2392 bp Feature: domain Description: FACL_like_6 Location: 1 342-2392 bp Feature: gene Location: 2699-3694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2885-3431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2885-3431 bp Feature: gene Location: 3711-5306 bp Feature: gene Location: 5443-6150 bp Feature: domain Description: TrmO Location: 5500-5869 bp Feature: domain Description: TrmO Location: 5500-5869 bp Feature: domain Description: TrmO_C Location: 5923-6085 bp Feature: domain Description: TrmO_C Location: 5923-6085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TrmO, TrmO_C (pfam18389), PRK08279 (long-chain-acyl-CoA synthetase; Validated), FACL_like_6 (cd05922)

Seq: KE992363.1 Clostridium sp. ATCC BAA-442 genomic scaffold Scaffold1689, whole genome shotgun sequence (70453 bp)
Overview 1 RT 1: 8346-11496 bp Neighborhood of RT #1 [8346, 11543] ChiA1_BD RVT-DGRs COG4877 Feature: gene Location: 8346-8741 bp Feature: gene Location: 8731-9348 bp Feature: domain Description: ChiA1_BD Location: 9046-9172 bp Feature: domain Description: ChiA1_BD Location: 9046-9172 bp Feature: gene Location: 9309-10103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9312-9837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9312 -9837 bp Feature: gene Location: 10888-11352 bp Feature: gene Location: 11355-11543 bp Feature: domain Description: COG4877 Location: 11364-11496 bp Feature: domain Description: COG4877 Location: 11364-11496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4877 (Uncharacterized protein ), ChiA1_BD (cd12214), RVT-DGRs

Seq: KE992330.1 Clostridium sp. ATCC BAA-442 genomic scaffold Scaffold1535, whole genome shotgun sequence (10470 bp)
Overview 1 RT 1: 1-5389 bp Neighborhood of RT #1 [1, 5389] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII VirD4 Feature: gene Location: 1-1682 bp Feature: domain Description: SR_TndX_transposase Location: 25-433 bp Feature: domain Description: SR_TndX_transposase Location: 25-43 3 bp Feature: domain Description: Recombinase Location: 532-895 bp Feature: domain Description: Recombinase Location: 53 2-895 bp Feature: domain Description: Zn_ribbon_recom Location: 937-1120 bp Feature: domain Description: Zn_ribbon_recom Location: 93 7-1120 bp Feature: domain Description: DUF4368 Location: 1405-1591 bp Feature: domain Description: DUF43 68 Location: 1405-1591 bp Feature: gene Location: 1756-1965 bp Feature: gene Location: 2134-4041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-3211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2467-3 211 bp Feature: gene Location: 4667-5035 bp Feature: domain Description: VirD4 Location: 4670-4982 bp Feature: domain Description: VirD4 Location: 4670-4982 bp Feature: gene Location: 5136-5389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, VirD4 (COG3505)

Seq: KE992280.1 Clostridium sp. ATCC BAA-442 genomic scaffold Scaffold131, whole genome shotgun sequence (4981 bp)
Overview 1 RT 1: 1159-4311 bp Neighborhood of RT #1 [1159, 4529] RVT-Retrons UPRTase Feature: gene Location: 1159-1374 bp Feature: gene Location: 1376-1495 bp Feature: gene Location: 2047-3159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2329-2887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2329-2887 bp Feature: gene Location: 3195-3500 bp Feature: gene Location: 3699-4529 bp Feature: domain Description: UPRTase Location: 4134-4311 bp Feature: domain Description: UPRTase Location: 4 134 -4 311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UPRTase (pfam14681)

Seq: KE992356.1 Clostridium sp. ATCC BAA-442 genomic scaffold Scaffold1659, whole genome shotgun sequence (27967 bp)
Overview 1 RT 1: 14669-19335 bp Neighborhood of RT #1 [14669, 19335] Ape1-like_AP-endo RVT_N RVT-GII GIIM OmpR Feature: gene Location: 14669-15037 bp Feature: gene Location: 15048-15788 bp Feature: domain Description: Ape1-like_AP-endo Location: 15051-15786 bp Feature: domain Description: Ape1-like_AP-endo Location: 15 05 1-15 786 bp Feature: gene Location: 15825-17879 bp Feature: RT Description: RVT_N Location: 15840-16077 bp Feature: RT Description: RVT_N Location: 15 840-16077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16128-16746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16128-16746 bp Feature: domain Description: GIIM Note: maturase Location: 16812-17037 bp Feature: domain Description: GIIM Note: maturase Location: 16812-17037 bp Feature: gene Location: 18079-18768 bp Feature: domain Description: OmpR Location: 18091-18763 bp Feature: domain Description: OmpR Location: 18091-18763 bp Feature: gene Location: 19039-19335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ape1-like_AP-endo (cd09087), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), OmpR (COG0745)