myRT

myRT report for GCA_000466465.2_ASM46646v2

Download annotations/find similar RTs

Seq: KE992713.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold471, whole genome shotgun sequence (2441 bp)
Overview 1 RT 1: 123-1581 bp Neighborhood of RT #1 [123, 1913] RVT-GII Intron_maturas2 Feature: gene Location: 123-1913 bp Ori: ERI68410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1 203 bp Feature: domain Description: Intron_maturas2 Location: 1287-1581 bp Feature: domain Description: Intron_maturas2 Location: 1 287-1 581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: KE992656.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold153, whole genome shotgun sequence (95811 bp)
Overview 1 RT 1: 83669-88132 bp Neighborhood of RT #1 [83669, 88188] POMP_repeat POMP_repeat POMP_repeat POMP_repeat Beta_helix RVT-Retrons MPP_AQ1575 VOC Feature: gene Location: 83669-85488 bp Ori: ERI70536.1 Feature: domain Description: POMP_repeat Location: 84182-84236 bp Feature: domain Description: POMP_repeat Location: 84182 -842 36 bp Feature: domain Description: POMP_repeat Location: 84275-84332 bp Feature: domain Description: POMP_repeat Location: 842 75-84332 bp Feature: domain Description: POMP_repeat Location: 84752-84800 bp Feature: domain Description: POMP_repeat Location: 84752 -84800 bp Feature: domain Description: POMP_repeat Location: 84848-84887 bp Feature: domain Description: POMP_repeat Location: 84848-84887 bp Feature: domain Description: Beta_helix Location: 84941-85451 bp Feature: domain Description: Beta_helix Location: 84941-85451 bp Feature: gene Location: 85596-85817 bp Feature: gene Location: 86057-87043 bp Ori: ERI70538.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86228-86780 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 862 2 8-86780 bp Feature: gene Location: 87119-87676 bp Ori: ERI70539.1 Feature: domain Description: MPP_AQ1575 Location: 87128-87512 bp Feature: domain Description: MPP_AQ1575 Location: 8712 8-87512 bp Feature: gene Location: 87751-88188 bp Ori: ERI70540.1 Feature: domain Description: VOC Location: 87781-88132 bp Feature: domain Description: VOC Location: 87781-88132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT POMP_repeat (TIGR01376), Beta_helix (pfam13229), RVT-Retrons, MPP_AQ1575 (cd07390), VOC (cl14632)

Seq: KE992773.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold90, whole genome shotgun sequence (77749 bp)
Overview 1 RT 1: 45570-50394 bp Neighborhood of RT #1 [45570, 50978] DUF4315 Spr RVT-GII Intron_maturas2 HNHc Spr DUF148 Feature: gene Location: 45570-45827 bp Ori: ERI71099.1 Feature: domain Description: DUF4315 Location: 45582-45819 bp Feature: domain Description: DUF43 15 Location: 45582-45819 bp Feature: gene Location: 45849-46004 bp Ori: ERI71100.1 Feature: domain Description: Spr Location: 45903-45984 bp Feature: domain Description: Spr Location: 45903 -45984 bp Feature: gene Location: 46071-47867 bp Ori: ERI71101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46338-47148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 3 8-47148 bp Feature: domain Description: Intron_maturas2 Location: 47214-47526 bp Feature: domain Description: Intron_maturas2 Location: 47214-47526 bp Feature: domain Description: HNHc Note: nucleases Location: 47685-47841 bp Feature: domain Description: HNHc Note: nucleases Location: 47685-47841 bp Feature: gene Location: 48486-50138 bp Ori: ERI71102.1 Feature: domain Description: Spr Location: 49845-50121 bp Feature: domain Description: Spr Location: 49845-50121 bp Feature: gene Location: 50187-50978 bp Ori: ERI71103.1 Feature: domain Description: DUF148 Location: 50226-50394 bp Feature: domain Description: DUF148 Location: 50226-503 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4315 (pfam14193), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF148 (pfam02520)

Seq: KE992682.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold289, whole genome shotgun sequence (59572 bp)
Overview 1 RT 1: 46796-58114 bp Neighborhood of RT #1 [46796, 58149] ABC_6TM_exporters dnaG RVT-UNC CspB_prodomain Peptidases_S8_CspA-like pyrE_Therm Feature: gene Location: 46796-47491 bp Ori: ERI69875.1 Feature: domain Description: ABC_6TM_exporters Location: 46814-47447 bp Feature: domain Description: ABC_6TM_exporters Location: 4 6814 -4 74 4 7 bp Feature: gene Location: 47490-47900 bp Feature: gene Location: 48140-55246 bp Ori: ERI69876.1 Feature: domain Description: dnaG Location: 48149-49148 bp Feature: domain Description: dnaG Location: 4 814 9-4 914 8 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 49892-50465 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4 9892-504 65 bp Feature: gene Location: 55578-57371 bp Ori: ERI69877.1 Feature: domain Description: CspB_prodomain Location: 55590-55851 bp Feature: domain Description: CspB_prodomain Location: 55590-55851 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 55947-57339 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 5594 7-57339 bp Feature: gene Location: 57508-58149 bp Ori: ERI69878.1 Feature: domain Description: pyrE_Therm Location: 57574-58114 bp Feature: domain Description: pyrE_Therm Location: 57574 -58114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_6TM_exporters (cl38913), dnaG (TIGR01391), RVT-UG10/RVT-UG1/RVT-UG2/RVT-UG25(RVT-UNC), CspB_prodomain (pfam18425), Peptidases_S8_CspA-like (cd07478), pyrE_Therm (TIGR01367)

Seq: KE992711.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold460, whole genome shotgun sequence (70916 bp)
Overview 1 RT 1: 65345-68153 bp Neighborhood of RT #1 [65345, 68153] VanZ RVT-GII Feature: gene Location: 65345-65827 bp Ori: ERI68453.1 Feature: domain Description: VanZ Location: 65357-65747 bp Feature: domain Description: VanZ Location: 65 35 7-65 747 bp Feature: gene Location: 66276-66479 bp Feature: gene Location: 66472-67446 bp Ori: ERI68455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66604-67282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66604-67282 bp Feature: gene Location: 67779-67970 bp Feature: gene Location: 67989-68153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), RVT-GII

Seq: KE992767.1 Clostridium sp. KLE 1755 genomic scaffold Scaffold84, whole genome shotgun sequence (1867 bp)
Overview 1 RT 1: 364-1600 bp Neighborhood of RT #1 [364, 1776] RVT-GII GIIM Feature: gene Location: 364-1776 bp Ori: ERI71217.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703-1318 bp Feature: domain Description: GIIM Note: maturase Location: 1378-1600 bp Feature: domain Description: GIIM Note: maturase Location: 1378-16 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)