myRT

myRT report for GCA_000467205.1_Shigella_sonnei_strain_1DT-1

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Seq: AURV01000101.1 Shigella sonnei 1DT-1 IDTI_contig_101, whole genome shotgun sequence (2456 bp)
Overview 1 RT 1: 135-2388 bp Neighborhood of RT #1 [135, 2453] RVT-GII GIIM PHA02517 Feature: gene Location: 135-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1 1 40 bp Feature: domain Description: GIIM Note: maturase Location: 1215-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 5-1 41 3 bp Feature: gene Location: 2250-2453 bp Feature: domain Description: PHA02517 Location: 2253-2388 bp Feature: domain Description: PHA0251 7 Location: 2253-2388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AURV01000247.1 Shigella sonnei 1DT-1 IDTI_contig_247, whole genome shotgun sequence (3369 bp)
Overview 1 RT 1: 397-3231 bp Neighborhood of RT #1 [397, 3368] GT4_PimA-like RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 397-1113 bp Feature: domain Description: GT4_PimA-like Location: 640-1108 bp Feature: domain Description: GT4_PimA-like Location: 640-1108 bp Feature: gene Location: 1155-1304 bp Feature: gene Location: 1570-2802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1771-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1771-2 42 5 bp Feature: domain Description: GIIM Note: maturase Location: 2503-2725 bp Feature: domain Description: GIIM Note: maturase Location: 2 503-2 72 5 bp Feature: gene Location: 2895-3056 bp Feature: gene Location: 3096-3368 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3102-3231 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3102 -32 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), GT4_PimA-like (cd03801)