myRT

myRT report for GCA_000467815.1_ASM46781v1

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Seq: KI259077.1 Porphyromonas gingivalis F0569 genomic scaffold Scaffold668, whole genome shotgun sequence (2424 bp)
Overview 1 RT 1: 128-2383 bp Neighborhood of RT #1 [128, 2383] RVT_N RVT-GII GIIM Feature: gene Location: 128-1801 bp Ori: ERJ66010.1 Feature: domain Description: RVT_N Location: 191-434 bp Feature: domain Description: RVT_N Location: 1 91 -434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-1 1 27 bp Feature: domain Description: GIIM Note: maturase Location: 1184-1415 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 84-1 41 5 bp Feature: gene Location: 2207-2383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KI259079.1 Porphyromonas gingivalis F0569 genomic scaffold Scaffold672, whole genome shotgun sequence (94137 bp)
Overview 1 RT 1: 27103-33299 bp Neighborhood of RT #1 [27103, 33299] cas_Cmr5 Cmr6_III-B CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 27103-27543 bp Ori: ERJ65938.1 Feature: domain Description: cas_Cmr5 Location: 27142-27319 bp Feature: domain Description: cas_Cmr5 Location: 2 7142 -2 7319 bp Feature: gene Location: 27540-28280 bp Ori: ERJ65939.1 Feature: domain Description: Cmr6_III-B Location: 27615-28269 bp Feature: domain Description: Cmr6_III-B Location: 2 7615-2 82 69 bp Feature: gene Location: 28342-31437 bp Ori: ERJ65940.1 Feature: domain Description: CRISPR_Cas6 Location: 28876-29230 bp Feature: domain Description: CRISPR_Cas6 Location: 2 8876-2 92 30 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29380-29992 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 9380-2 9992 bp Feature: domain Description: Cas1_I-II-III Location: 30442-31399 bp Feature: domain Description: Cas1_I-II-III Location: 30442 -31399 bp Feature: gene Location: 31457-31747 bp Ori: ERJ65941.1 Feature: domain Description: Cas2_I_II_III Location: 31478-31697 bp Feature: domain Description: Cas2 _I_II_III Location: 31478-31697 bp Feature: gene Location: 32946-33299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas_Cmr5 (TIGR01881), Cmr6_III-B (cd09661), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)