myRT

myRT report for GCA_000469035.1_sf7882_v1

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Seq: AVAH01000006.1 Serratia fonticola LMG 7882 serratia7882_scaffold6, whole genome shotgun sequence (146402 bp)
Overview 1 RT 1: 139334-142710 bp Neighborhood of RT #1 [139334, 142715] RVT-UG4 FimA PRK15287 Feature: gene Location: 139334-139672 bp Feature: gene Location: 139750-140583 bp Feature: gene Location: 140625-141611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 140982-141429 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 40982-1 41 429 bp Feature: gene Location: 141629-142204 bp Feature: domain Description: FimA Location: 141671-142202 bp Feature: domain Description: FimA Location: 1 41 671 -1 42202 bp Feature: gene Location: 142215-142715 bp Feature: domain Description: PRK15287 Location: 142257-142710 bp Feature: domain Description: PRK1 5287 Location: 1 42257-1 4271 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)

Seq: AVAH01000010.1 Serratia fonticola LMG 7882 serratia7882_scaffold10, whole genome shotgun sequence (102646 bp)
Overview 1 RT 1: 82031-85004 bp Neighborhood of RT #1 [82031, 85006] RVT-UG4 FimA Feature: gene Location: 82031-82195 bp Feature: gene Location: 82561-83400 bp Feature: gene Location: 83437-84450 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 83821-84268 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8382 1-842 68 bp Feature: gene Location: 84188-84406 bp Feature: gene Location: 84443-85006 bp Feature: domain Description: FimA Location: 84500-85004 bp Feature: domain Description: FimA Location: 84500-85004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970)

Seq: AVAH01000058.1 Serratia fonticola LMG 7882 serratia7882_scaffold58, whole genome shotgun sequence (27266 bp)
Overview 1 RT 1: 16604-20284 bp Neighborhood of RT #1 [16604, 20284] PRK15287 PRK15260 RVT-UG4 Feature: gene Location: 16604-17104 bp Feature: domain Description: PRK15287 Location: 16628-17102 bp Feature: domain Description: PRK15287 Location: 16628-17102 bp Feature: gene Location: 17116-17664 bp Feature: domain Description: PRK15260 Location: 17146-17659 bp Feature: domain Description: PRK15260 Location: 17146-17659 bp Feature: gene Location: 17701-17922 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 17737-17920 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1773 7-17920 bp Feature: gene Location: 18145-19023 bp Feature: gene Location: 19442-20284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), PRK15260 (fimbrial protein SteF; Provisional), RVT-UG4

Seq: AVAH01000110.1 Serratia fonticola LMG 7882 serratia7882_scaffold110, whole genome shotgun sequence (12502 bp)
Overview 1 RT 1: 1230-8695 bp Neighborhood of RT #1 [1230, 8695] FimC FimD RVT-UG4 Feature: gene Location: 1230-1835 bp Feature: domain Description: FimC Location: 1233-1830 bp Feature: domain Description: FimC Location: 1233-1830 bp Feature: gene Location: 1892-4519 bp Feature: domain Description: FimD Location: 1976-4451 bp Feature: domain Description: FimD Location: 1976-4 4 51 bp Feature: gene Location: 4583-6643 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5057-5495 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5057-54 95 bp Feature: gene Location: 7784-8032 bp Feature: gene Location: 8054-8695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4

Seq: AVAH01000253.1 Serratia fonticola LMG 7882 serratia7882_scaffold253, whole genome shotgun sequence (4775 bp)
Overview 1 RT 1: 74-2514 bp Neighborhood of RT #1 [74, 2522] RVT-GII GIIM Dps Feature: gene Location: 74-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 -1013 bp Feature: domain Description: GIIM Note: maturase Location: 1061-1292 bp Feature: domain Description: GIIM Note: maturase Location: 1061-1292 bp Feature: gene Location: 1497-1697 bp Feature: gene Location: 2031-2522 bp Feature: domain Description: Dps Location: 2058-2514 bp Feature: domain Description: Dps Location: 205 8-25 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Dps (COG0783)