myRT

myRT report for GCA_000469425.1_ASM46942v1

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Seq: KI271502.1 Oscillibacter sp. KLE 1728 genomic scaffold Scaffold275, whole genome shotgun sequence (88697 bp)
Overview 1 RT 1: 42790-45567 bp Neighborhood of RT #1 [42790, 45567] Phage_int_SAM_1 INT_C_like_2 RVT-Retrons Feature: gene Location: 42790-42999 bp Feature: gene Location: 43008-43853 bp Ori: ERK60855.1 Feature: domain Description: Phage_int_SAM_1 Location: 43044-43266 bp Feature: domain Description: Phage_int_SAM_1 Location: 43044-43266 bp Feature: domain Description: INT_C_like_2 Location: 43341-43833 bp Feature: domain Description: INT_C_like_2 Location: 43341 -43833 bp Feature: gene Location: 43992-45032 bp Ori: ERK60856.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44184-44736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 84-44736 bp Feature: gene Location: 45205-45339 bp Feature: gene Location: 45433-45567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_C_like_2 (cd01191), RVT-Retrons

Seq: KI271479.1 Oscillibacter sp. KLE 1728 genomic scaffold Scaffold19, whole genome shotgun sequence (33338 bp)
Overview 1 RT 1: 10043-18397 bp Neighborhood of RT #1 [10043, 18627] YbbA SLATT_5 RVT-UG17 ABC_sbcCD SbcD Feature: gene Location: 10043-10729 bp Ori: ERK64832.1 Feature: domain Description: YbbA Location: 10208-10688 bp Feature: domain Description: YbbA Location: 102 08-10688 bp Feature: gene Location: 11594-12220 bp Ori: ERK64833.1 Feature: domain Description: SLATT_5 Location: 11621-12203 bp Feature: domain Description: SLATT_5 Location: 1162 1-12 2 03 bp Feature: gene Location: 12238-13734 bp Ori: ERK64834.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 12496-13108 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 12 496-13108 bp Feature: gene Location: 14063-17356 bp Ori: ERK64835.1 Feature: domain Description: ABC_sbcCD Location: 14066-17339 bp Feature: domain Description: ABC_sbcCD Location: 14066-17339 bp Feature: gene Location: 17353-18627 bp Ori: ERK64836.1 Feature: domain Description: SbcD Location: 17488-18397 bp Feature: domain Description: SbcD Location: 17488-18397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbbA (COG4181), SLATT_5 (pfam18160), RVT-UG17, ABC_sbcCD (cd03279), SbcD (COG0420)

Seq: KI271567.1 Oscillibacter sp. KLE 1728 genomic scaffold Scaffold551, whole genome shotgun sequence (171459 bp)
Overview 1 RT 1: 76532-80496 bp Neighborhood of RT #1 [76532, 80552] ChiA1_BD ChiA1_BD RVT-DGRs Avd_like Feature: gene Location: 76532-77005 bp Ori: ERK54283.1 Feature: domain Description: ChiA1_BD Location: 76709-76838 bp Feature: domain Description: ChiA1_BD Location: 76709-7683 8 bp Feature: domain Description: ChiA1_BD Location: 76895-76973 bp Feature: domain Description: ChiA1_BD Location: 76895-76973 bp Feature: gene Location: 77024-78592 bp Feature: gene Location: 78519-79793 bp Ori: ERK54285.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 78735-79338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7873 5-793 3 8 bp Feature: gene Location: 79910-80032 bp Feature: gene Location: 80097-80552 bp Ori: ERK54287.1 Feature: domain Description: Avd_like Location: 80172-80496 bp Feature: domain Description: Avd_like Location: 80172-80496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs, Avd_like (cd16376)

Seq: KI271554.1 Oscillibacter sp. KLE 1728 genomic scaffold Scaffold489, whole genome shotgun sequence (71342 bp)
Overview 1 RT 1: 51880-57080 bp Neighborhood of RT #1 [51880, 57112] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 51880-52608 bp Feature: gene Location: 52829-53248 bp Ori: ERK55740.1 Feature: domain Description: Avd_like Location: 52874-53198 bp Feature: domain Description: Avd_like Location: 52874 -53198 bp Feature: gene Location: 53578-54684 bp Ori: ERK55741.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53779-54385 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53779-54 385 bp Feature: gene Location: 54626-56323 bp Feature: gene Location: 56336-57112 bp Ori: ERK55743.1 Feature: domain Description: ChiA1_BD Location: 56618-56687 bp Feature: domain Description: ChiA1_BD Location: 56618-56687 bp Feature: domain Description: ChiA1_BD Location: 56978-57080 bp Feature: domain Description: ChiA1_BD Location: 56978-57080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, ChiA1_BD (cd12214)

Seq: KI271534.1 Oscillibacter sp. KLE 1728 genomic scaffold Scaffold396, whole genome shotgun sequence (105713 bp)
Overview 1 RT 1: 109-4044 bp Neighborhood of RT #1 [109, 4044] T4SS-DNA_transf RVT-GII HNHc TraG-D_C Feature: gene Location: 109-333 bp Ori: ERK58318.1 Feature: domain Description: T4SS-DNA_transf Location: 115-316 bp Feature: domain Description: T4SS-DNA_transf Location: 115 -316 bp Feature: gene Location: 1053-2939 bp Ori: ERK58319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2109 bp Feature: domain Description: HNHc Note: nucleases Location: 2685-2829 bp Feature: domain Description: HNHc Note: nucleases Location: 2685 -2829 bp Feature: gene Location: 3143-3634 bp Ori: ERK58320.1 Feature: domain Description: TraG-D_C Location: 3146-3410 bp Feature: domain Description: TraG-D_C Location: 3146-3410 bp Feature: gene Location: 3781-4044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)