myRT

myRT report for GCA_000469445.2_ASM46944v2

Download annotations/find similar RTs

Seq: KI271720.1 Oscillibacter sp. KLE 1745 genomic scaffold Scaffold301, whole genome shotgun sequence (117052 bp)
Overview 1 RT 1: 113007-116925 bp Neighborhood of RT #1 [113007, 116942] TraG-D_C RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 113007-113270 bp Feature: gene Location: 113417-113908 bp Ori: ERK62773.1 Feature: domain Description: TraG-D_C Location: 113420-113684 bp Feature: domain Description: TraG-D_C Location: 1 1 3420-1 1 3684 bp Feature: gene Location: 114112-115998 bp Ori: ERK62774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114436-115168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4436-1 1 51 68 bp Feature: domain Description: HNHc Note: nucleases Location: 115744-115888 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 5744-1 1 5888 bp Feature: gene Location: 116718-116942 bp Ori: ERK62775.1 Feature: domain Description: T4SS-DNA_transf Location: 116724-116925 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 6724-1 1 6925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: KI271741.1 Oscillibacter sp. KLE 1745 genomic scaffold Scaffold378, whole genome shotgun sequence (169075 bp)
Overview 1 RT 1: 76106-81089 bp Neighborhood of RT #1 [76106, 81089] ChiA1_BD ChiA1_BD RVT-DGRs Avd_like Feature: gene Location: 76106-76579 bp Ori: ERK59182.1 Feature: domain Description: ChiA1_BD Location: 76283-76412 bp Feature: domain Description: ChiA1_BD Location: 762 83-76412 bp Feature: domain Description: ChiA1_BD Location: 76469-76547 bp Feature: domain Description: ChiA1_BD Location: 76469-76547 bp Feature: gene Location: 76598-78166 bp Feature: gene Location: 78093-79367 bp Ori: ERK59184.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 78309-78912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 78309-78912 bp Feature: gene Location: 79671-80126 bp Ori: ERK59185.1 Feature: domain Description: Avd_like Location: 79746-80070 bp Feature: domain Description: Avd_like Location: 79746-80070 bp Feature: gene Location: 80343-81089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs, Avd_like (cd16376)

Seq: KI271715.1 Oscillibacter sp. KLE 1745 genomic scaffold Scaffold281, whole genome shotgun sequence (88340 bp)
Overview 1 RT 1: 42436-45213 bp Neighborhood of RT #1 [42436, 45213] Phage_int_SAM_1 INT_C_like_2 RVT-Retrons Feature: gene Location: 42436-42645 bp Feature: gene Location: 42654-43499 bp Ori: ERK63272.1 Feature: domain Description: Phage_int_SAM_1 Location: 42690-42912 bp Feature: domain Description: Phage_int_SAM_1 Location: 42690-42912 bp Feature: domain Description: INT_C_like_2 Location: 42987-43479 bp Feature: domain Description: INT_C_like_2 Location: 42987-43 479 bp Feature: gene Location: 43638-44678 bp Ori: ERK63273.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43830-44382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43 83 0-443 82 bp Feature: gene Location: 44851-44985 bp Feature: gene Location: 45079-45213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_C_like_2 (cd01191), RVT-Retrons

Seq: KI271752.1 Oscillibacter sp. KLE 1745 genomic scaffold Scaffold420, whole genome shotgun sequence (71413 bp)
Overview 1 RT 1: 14302-19534 bp Neighborhood of RT #1 [14302, 19534] ChiA1_BD ChiA1_BD RVT-DGRs Avd_like Feature: gene Location: 14302-15078 bp Ori: ERK57860.1 Feature: domain Description: ChiA1_BD Location: 14584-14653 bp Feature: domain Description: ChiA1_BD Location: 14 584 -14 653 bp Feature: domain Description: ChiA1_BD Location: 14944-15046 bp Feature: domain Description: ChiA1_BD Location: 14 94 4 -1504 6 bp Feature: gene Location: 15091-16788 bp Feature: gene Location: 16730-17836 bp Ori: ERK57862.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16931-17537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16931-17537 bp Feature: gene Location: 18166-18585 bp Ori: ERK57863.1 Feature: domain Description: Avd_like Location: 18211-18535 bp Feature: domain Description: Avd_like Location: 18211-18535 bp Feature: gene Location: 18806-19534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs, Avd_like (cd16376)

Seq: KI271675.1 Oscillibacter sp. KLE 1745 genomic scaffold Scaffold18, whole genome shotgun sequence (96459 bp)
Overview 1 RT 1: 14714-23257 bp Neighborhood of RT #1 [14714, 23298] SbcD ABC_sbcCD RVT-UG17 SLATT_5 YbbA Feature: gene Location: 14714-15988 bp Ori: ERK68517.1 Feature: domain Description: SbcD Location: 14849-15758 bp Feature: domain Description: SbcD Location: 14849-15 75 8 bp Feature: gene Location: 15985-19278 bp Ori: ERK68518.1 Feature: domain Description: ABC_sbcCD Location: 15988-19261 bp Feature: domain Description: ABC_sbcCD Location: 15 988-19261 bp Feature: gene Location: 19607-21103 bp Ori: ERK68519.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 19865-20477 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 19865 -20477 bp Feature: gene Location: 21121-21747 bp Ori: ERK68520.1 Feature: domain Description: SLATT_5 Location: 21148-21730 bp Feature: domain Description: SLATT_5 Location: 21148-21730 bp Feature: gene Location: 22612-23298 bp Ori: ERK68521.1 Feature: domain Description: YbbA Location: 22777-23257 bp Feature: domain Description: YbbA Location: 22777-2325 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcD (COG0420), ABC_sbcCD (cd03279), RVT-UG17, SLATT_5 (pfam18160), YbbA (COG4181)