myRT

myRT report for GCA_000471805.1_ASM47180v1

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Seq: BAHY01000184.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00184, whole genome shotgun sequence (1637 bp)
Overview 1 RT 1: 3-1590 bp Neighborhood of RT #1 [3, 1634] group_II_RT_mat RVT-GII RVT-GII GIIM Feature: gene Location: 3-152 bp Feature: gene Location: 506-718 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 536-617 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 536-61 7 bp Feature: gene Location: 726-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-870 bp Feature: gene Location: 906-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909-1 326 bp Feature: domain Description: GIIM Note: maturase Location: 1380-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1 380-1 590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: BAHY01000179.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00179, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 279-2367 bp Neighborhood of RT #1 [279, 2402] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-784 bp Feature: gene Location: 876-2402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1668 bp Feature: domain Description: Intron_maturas2 Location: 1740-2043 bp Feature: domain Description: Intron_maturas2 Location: 1740-2 043 bp Feature: domain Description: HNHc Note: nucleases Location: 2223-2367 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 2 3-2 367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAHY01000116.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00116, whole genome shotgun sequence (19702 bp)
Overview 1 RT 1: 4113-8743 bp Neighborhood of RT #1 [4113, 9081] RVT-GII HNHc CpaF TadB Feature: gene Location: 4113-4439 bp Feature: gene Location: 4529-4669 bp Feature: gene Location: 5171-6997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5486-6185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5486-6185 bp Feature: domain Description: HNHc Note: nucleases Location: 6734-6875 bp Feature: domain Description: HNHc Note: nucleases Location: 673 4-6875 bp Feature: gene Location: 7046-8152 bp Feature: domain Description: CpaF Location: 7106-8003 bp Feature: domain Description: CpaF Location: 7106-8003 bp Feature: gene Location: 8149-9081 bp Feature: domain Description: TadB Location: 8305-8743 bp Feature: domain Description: TadB Location: 83 05-8743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), CpaF (COG4962), TadB (COG4965)

Seq: BAHY01000072.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00072, whole genome shotgun sequence (37200 bp)
Overview 1 RT 1: 20130-25129 bp Neighborhood of RT #1 [20130, 25155] DUF2871 RVT-Retrons RVT-Retrons PRK14806 PRK06545 Feature: gene Location: 20130-20813 bp Feature: gene Location: 20815-21258 bp Feature: domain Description: DUF2871 Location: 20851-21241 bp Feature: domain Description: DUF2871 Location: 20851-2124 1 bp Feature: gene Location: 21602-22201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21767-22181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21767-22181 bp Feature: gene Location: 22198-22611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22201-22321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22201-22321 bp Feature: gene Location: 22757-24034 bp Feature: domain Description: PRK14806 Location: 22769-24011 bp Feature: domain Description: PRK14 806 Location: 22769-24 011 bp Feature: gene Location: 24058-25155 bp Feature: domain Description: PRK06545 Location: 24073-25129 bp Feature: domain Description: PRK0654 5 Location: 24 073-25129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2871 (pfam11070), RVT-Retrons, PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), PRK06545 (prephenate dehydrogenase; Validated)

Seq: BAHY01000049.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00049, whole genome shotgun sequence (56832 bp)
Overview 1 RT 1: 32254-40195 bp 2 RT 2: 53315-56333 bp Neighborhood of RT #1 [32254, 40200] ParB_N_like RVT-GII HNHc COG4646 COG4646 Neighborhood of RT #2 [53315, 56443] RVT-GII RVT-GII HNHc Feature: gene Location: 32254-33375 bp Feature: domain Description: ParB_N_like Location: 32446-32692 bp Feature: domain Description: ParB_N_like Location: 32446-32692 bp Feature: gene Location: 33388-35727 bp Feature: gene Location: 36405-38276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36726-37461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36726-37461 bp Feature: domain Description: HNHc Note: nucleases Location: 38016-38157 bp Feature: domain Description: HNHc Note: nucleases Location: 38016-3815 7 bp Feature: gene Location: 38546-38965 bp Feature: domain Description: COG4646 Location: 38711-38954 bp Feature: domain Description: COG4646 Location: 38711-3895 4 bp Feature: gene Location: 39001-40200 bp Feature: domain Description: COG4646 Location: 39142-40195 bp Feature: domain Description: COG4646 Location: 39142-40195 bp Feature: gene Location: 53315-53563 bp Feature: gene Location: 53567-53818 bp Feature: gene Location: 54573-55091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54888-54999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 4888-5 4999 bp Feature: gene Location: 55124-56443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55130-55613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 130-5 5 613 bp Feature: domain Description: HNHc Note: nucleases Location: 56165-56333 bp Feature: domain Description: HNHc Note: nucleases Location: 5 6165 -5 6333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: BAHY01000023.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00023, whole genome shotgun sequence (81066 bp)
Overview 1 RT 1: 21500-24354 bp Neighborhood of RT #1 [21500, 24354] SBF RVT-GII Intron_maturas2 Feature: gene Location: 21500-21814 bp Feature: domain Description: SBF Location: 21509-21758 bp Feature: domain Description: SBF Location: 21509-21758 bp Feature: gene Location: 21838-21984 bp Feature: gene Location: 22550-24064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22877-23558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22877-23558 bp Feature: domain Description: Intron_maturas2 Location: 23630-23957 bp Feature: domain Description: Intron_maturas2 Location: 236 30-23957 bp Feature: gene Location: 24074-24208 bp Feature: gene Location: 24217-24354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SBF (pfam01758), RVT-GII, Intron_maturas2 (pfam01348)

Seq: BAHY01000013.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00013, whole genome shotgun sequence (93431 bp)
Overview 1 RT 1: 42025-48294 bp Neighborhood of RT #1 [42025, 48294] DEDD_Tnp_IS110 Transposase_20 Peptidase_A24 RVT-GII HNHc Feature: gene Location: 42025-43236 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 42043-42511 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 42043-42511 bp Feature: domain Description: Transposase_20 Location: 42859-43105 bp Feature: domain Description: Transposase_20 Location: 42859-43105 bp Feature: gene Location: 43338-43892 bp Feature: domain Description: Peptidase_A24 Location: 43419-43761 bp Feature: domain Description: Peptidase_A24 Location: 43419-437 61 bp Feature: gene Location: 44047-45933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44362-45091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44362-45091 bp Feature: domain Description: HNHc Note: nucleases Location: 45646-45814 bp Feature: domain Description: HNHc Note: nucleases Location: 45646-45814 bp Feature: gene Location: 46191-46376 bp Feature: gene Location: 46663-48294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), Peptidase_A24 (pfam01478), RVT-GII, HNHc (smart00507)

Seq: BAHY01000005.1 Bacteroides sp. VE202-11 DNA, contig: VE202-11_contig00005, whole genome shotgun sequence (139076 bp)
Overview 1 RT 1: 15325-20902 bp Neighborhood of RT #1 [15325, 20904] RVT-GII HNHc TraC-F-type DUF3851 Feature: gene Location: 15325-15627 bp Feature: gene Location: 15720-16298 bp Feature: gene Location: 17021-18994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17357-18095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17357-18 095 bp Feature: domain Description: HNHc Note: nucleases Location: 18650-18788 bp Feature: domain Description: HNHc Note: nucleases Location: 18 650-18 78 8 bp Feature: gene Location: 19160-20527 bp Feature: domain Description: TraC-F-type Location: 19184-20327 bp Feature: domain Description: TraC-F-type Location: 1918 4-20327 bp Feature: gene Location: 20530-20904 bp Feature: domain Description: DUF3851 Location: 20533-20902 bp Feature: domain Description: DUF38 51 Location: 20533-20902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), DUF3851 (pfam12962)