myRT

myRT report for GCA_000472725.1_ASM47272v1

Download annotations/find similar RTs

Seq: AXAF01000031.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_28.29_C, whole genome shotgun sequence (77859 bp)
Overview 1 RT 1: 706-4184 bp Neighborhood of RT #1 [706, 4184] Tra5 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 706-1578 bp Feature: domain Description: Tra5 Location: 748-1456 bp Feature: domain Description: Tra5 Location: 748-1 456 bp Feature: gene Location: 1556-1861 bp Feature: domain Description: HTH_Tnp_1 Location: 1613-1820 bp Feature: domain Description: HTH_Tnp_1 Location: 1 61 3-1 820 bp Feature: gene Location: 1987-3285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2242-2899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2242-2899 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3205 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3205 bp Feature: gene Location: 3291-3431 bp Feature: gene Location: 4050-4184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388)

Seq: AXAF01000043.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_40.41_C, whole genome shotgun sequence (31018 bp)
Overview 1 RT 1: 25298-31015 bp Neighborhood of RT #1 [25298, 31015] RVT-GII RVT-GII Feature: gene Location: 25298-27613 bp Feature: gene Location: 27689-27835 bp Feature: gene Location: 27906-29288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28233-28923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 33-2 892 3 bp Feature: gene Location: 29650-29865 bp Feature: gene Location: 29905-30207 bp Feature: gene Location: 30349-30768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30511-30607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30511-30607 bp Feature: gene Location: 30809-31015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXAF01000045.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_42.43_C, whole genome shotgun sequence (25839 bp)
Overview 1 RT 1: 17070-21486 bp Neighborhood of RT #1 [17070, 21548] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 17070-17246 bp Feature: gene Location: 17374-18099 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17392-17827 bp Feature: domain Description: DDE_Tnp_IS66 Location: 173 92-17827 bp Feature: gene Location: 18336-19664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18627-19290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18627-19290 bp Feature: domain Description: GIIM Note: maturase Location: 19356-19578 bp Feature: domain Description: GIIM Note: maturase Location: 193 56-19578 bp Feature: gene Location: 19600-20436 bp Feature: domain Description: LomR Location: 19636-20347 bp Feature: domain Description: LomR Location: 1963 6-203 47 bp Feature: gene Location: 20880-21548 bp Feature: domain Description: PHA02518 Location: 20889-21486 bp Feature: domain Description: PHA02518 Location: 20889-21486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: AXAF01000087.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_84.85_C, whole genome shotgun sequence (2230 bp)
Overview 1 RT 1: 1-1704 bp Neighborhood of RT #1 [1, 1704] RVT-GII RVT-GII Feature: gene Location: 1-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-382 bp Feature: gene Location: 609-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612-870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612-870 bp Feature: gene Location: 1003-1305 bp Feature: gene Location: 1375-1704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXAF01000090.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_87.88_C, whole genome shotgun sequence (1877 bp)
Overview 1 RT 1: 185-1627 bp Neighborhood of RT #1 [185, 1797] RVT-GII GIIM Feature: gene Location: 185-379 bp Feature: gene Location: 421-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748-1366 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AXAF01000097.1 Bradyrhizobium ottawaense strain USDA 4 A3AQDRAFT_scaffold_94.95_C, whole genome shotgun sequence (1221 bp)
Overview 1 RT 1: 237-1095 bp Neighborhood of RT #1 [237, 1220] RVT-GII Feature: gene Location: 237-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII