myRT

myRT report for GCA_000472745.1_ASM47274v1

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Seq: AXAG01000003.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_1.2_C, whole genome shotgun sequence (588553 bp)
Overview 1 RT 1: 140100-147033 bp Neighborhood of RT #1 [140100, 147033] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG12 SIR2_2 Feature: gene Location: 140100-141515 bp Feature: domain Description: HsdM Location: 140103-141510 bp Feature: domain Description: HsdM Location: 1 401 03-1 41 51 0 bp Feature: gene Location: 141530-143245 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 141776-142295 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 1 41 776-1 42295 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 142634-143195 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 1 42634-1 431 95 bp Feature: gene Location: 143347-144792 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 143500-143929 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 43500-1 43929 bp Feature: gene Location: 145274-146539 bp Feature: domain Description: SIR2_2 Location: 145829-146267 bp Feature: domain Description: SIR2_2 Location: 1 45829-1 46267 bp Feature: gene Location: 146656-147033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG12, SIR2_2 (pfam13289)

Seq: AXAG01000019.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_16.17_C, whole genome shotgun sequence (232811 bp)
Overview 1 RT 1: 121216-131346 bp Neighborhood of RT #1 [121216, 131369] DUF2336 YtcJ RVT-UG7 Mrr_cat PBP2_Bug27 Feature: gene Location: 121216-122331 bp Feature: domain Description: DUF2336 Location: 121492-122257 bp Feature: domain Description: DUF2 336 Location: 12 1492 -12 2 2 57 bp Feature: gene Location: 123210-124976 bp Feature: domain Description: YtcJ Location: 123387-124953 bp Feature: domain Description: YtcJ Location: 12 3387-12 4953 bp Feature: gene Location: 126513-128123 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 126957-127326 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 12 6957-12 732 6 bp Feature: gene Location: 128230-129123 bp Feature: domain Description: Mrr_cat Location: 128704-129004 bp Feature: domain Description: Mrr_cat Location: 12 8704-12 9004 bp Feature: gene Location: 130380-131369 bp Feature: domain Description: PBP2_Bug27 Location: 130482-131346 bp Feature: domain Description: PBP2 _Bug2 7 Location: 130482 -131346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2336 (pfam10098), YtcJ (COG1574), RVT-UG7, Mrr_cat (pfam04471), PBP2_Bug27 (cd13578)

Seq: AXAG01000032.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_29.30_C, whole genome shotgun sequence (74219 bp)
Overview 1 RT 1: 64729-68085 bp Neighborhood of RT #1 [64729, 68207] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 64729-64863 bp Feature: gene Location: 65482-65622 bp Feature: gene Location: 65628-66926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65883-66537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65883 -6653 7 bp Feature: domain Description: GIIM Note: maturase Location: 66618-66846 bp Feature: domain Description: GIIM Note: maturase Location: 66618-66846 bp Feature: gene Location: 67052-67357 bp Feature: domain Description: HTH_Tnp_1 Location: 67109-67316 bp Feature: domain Description: HTH_Tnp_1 Location: 67109-673 16 bp Feature: gene Location: 67335-68207 bp Feature: domain Description: Tra5 Location: 67377-68085 bp Feature: domain Description: Tra5 Location: 673 77-68085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AXAG01000048.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_45.46_C, whole genome shotgun sequence (26583 bp)
Overview 1 RT 1: 20899-26580 bp Neighborhood of RT #1 [20899, 26580] RVT-GII RVT-GII Feature: gene Location: 20899-23214 bp Feature: gene Location: 23290-23436 bp Feature: gene Location: 23507-24889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23834-24524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23834 -24 524 bp Feature: gene Location: 25251-25466 bp Feature: gene Location: 25506-25808 bp Feature: gene Location: 25950-26369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26109-26208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26109-26208 bp Feature: gene Location: 26410-26580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXAG01000055.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_52.53_C, whole genome shotgun sequence (14483 bp)
Overview 1 RT 1: 1445-7517 bp Neighborhood of RT #1 [1445, 7522] LptD RVT-GII GIIM PRK06215 Feature: gene Location: 1445-3892 bp Feature: domain Description: LptD Location: 1619-3815 bp Feature: domain Description: LptD Location: 1619-3815 bp Feature: gene Location: 3910-4101 bp Feature: gene Location: 4602-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5 5 47 bp Feature: domain Description: GIIM Note: maturase Location: 5622-5826 bp Feature: domain Description: GIIM Note: maturase Location: 5 622-5 826 bp Feature: gene Location: 5940-6341 bp Feature: gene Location: 6785-7522 bp Feature: domain Description: PRK06215 Location: 6794-7517 bp Feature: domain Description: PRK06215 Location: 6794-75 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT-GII, GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional)

Seq: AXAG01000060.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_57.58_C, whole genome shotgun sequence (12066 bp)
Overview 1 RT 1: 1388-5866 bp Neighborhood of RT #1 [1388, 5866] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 1388-2056 bp Feature: domain Description: PHA02518 Location: 1397-1994 bp Feature: domain Description: PHA02518 Location: 1397-1994 bp Feature: gene Location: 2500-3336 bp Feature: domain Description: LomR Location: 2536-3247 bp Feature: domain Description: LomR Location: 2536 -3247 bp Feature: gene Location: 3623-4600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3632-4226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 32-4226 bp Feature: domain Description: GIIM Note: maturase Location: 4292-4514 bp Feature: domain Description: GIIM Note: maturase Location: 4292-4514 bp Feature: gene Location: 4837-5562 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4855-5290 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 4855-5290 bp Feature: gene Location: 5690-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02518 (ParA-like protein; Provisional), LomR (COG3637), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: AXAG01000096.1 Bradyrhizobium japonicum USDA 38 A3AODRAFT_scaffold_93.94_C, whole genome shotgun sequence (2230 bp)
Overview 1 RT 1: 1-1704 bp Neighborhood of RT #1 [1, 1704] RVT-GII RVT-GII Feature: gene Location: 1-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-382 bp Feature: gene Location: 609-881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612-870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612-87 0 bp Feature: gene Location: 1003-1305 bp Feature: gene Location: 1375-1704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII