myRT

myRT report for GCA_000472865.1_ASM47286v1

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Seq: AXAP01000106.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_105.106_C, whole genome shotgun sequence (26932 bp)
Overview 1 RT 1: 3922-8778 bp Neighborhood of RT #1 [3922, 8807] LysR RVT-Retrons SRAP Feature: gene Location: 3922-4779 bp Feature: domain Description: LysR Location: 3946-4699 bp Feature: domain Description: LysR Location: 3946-4699 bp Feature: gene Location: 4885-5166 bp Feature: gene Location: 5702-7525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5909-6530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5909-6530 bp Feature: gene Location: 8156-8518 bp Feature: gene Location: 8586-8807 bp Feature: domain Description: SRAP Location: 8595-8778 bp Feature: domain Description: SRAP Location: 8595-8778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-Retrons, SRAP (pfam02586)

Seq: AXAP01000110.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_109.110_C, whole genome shotgun sequence (24429 bp)
Overview 1 RT 1: 18903-22466 bp Neighborhood of RT #1 [18903, 22480] COG5659 RVT-GII DDE_Tnp_1_2 Feature: gene Location: 18903-19052 bp Feature: gene Location: 19542-20423 bp Feature: domain Description: COG5659 Location: 19581-20421 bp Feature: domain Description: COG5659 Location: 19581-2 042 1 bp Feature: gene Location: 20531-21406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20537-21029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0537-2 102 9 bp Feature: gene Location: 21519-21821 bp Feature: gene Location: 22208-22480 bp Feature: domain Description: DDE_Tnp_1_2 Location: 22226-22466 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2 2 2 2 6-2 2 466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), RVT-GII, DDE_Tnp_1_2 (pfam13586)

Seq: AXAP01000125.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_124.125_C, whole genome shotgun sequence (15994 bp)
Overview 1 RT 1: 12468-15142 bp Neighborhood of RT #1 [12468, 15142] DoxX RVT-GII Feature: gene Location: 12468-13124 bp Feature: domain Description: DoxX Location: 12666-12942 bp Feature: domain Description: DoxX Location: 12666-12942 bp Feature: gene Location: 13365-14171 bp Feature: gene Location: 14402-14578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14426-14546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14426-14546 bp Feature: gene Location: 14721-14891 bp Feature: gene Location: 14975-15142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DoxX (pfam07681), RVT-GII

Seq: AXAP01000133.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_132.133_C, whole genome shotgun sequence (13737 bp)
Overview 1 RT 1: 1-2207 bp Neighborhood of RT #1 [1, 2207] RVT-GII CBS_pair_BON_assoc Feature: gene Location: 1-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -610 bp Feature: gene Location: 1170-1838 bp Feature: domain Description: CBS_pair_BON_assoc Location: 1191-1593 bp Feature: domain Description: CBS_pair_BON_assoc Location: 1191-1593 bp Feature: gene Location: 1899-2207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CBS_pair_BON_assoc (cd04586)

Seq: AXAP01000165.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_163.164_C, whole genome shotgun sequence (7499 bp)
Overview 1 RT 1: 6056-7477 bp Neighborhood of RT #1 [6056, 7497] RVT-GII Feature: gene Location: 6056-6217 bp Feature: gene Location: 6442-6609 bp Feature: gene Location: 6613-7497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7024-7477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7024-7477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXAP01000031.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_30.31_C, whole genome shotgun sequence (99205 bp)
Overview 1 RT 1: 86764-91773 bp Neighborhood of RT #1 [86764, 91787] PRK09692 RVT-GII GIIM RVT-GII aroE Feature: gene Location: 86764-87501 bp Feature: gene Location: 88029-89261 bp Feature: domain Description: PRK09692 Location: 88086-89232 bp Feature: domain Description: PRK096 92 Location: 88086 -89232 bp Feature: gene Location: 89470-89934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89476-89575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89476 -89575 bp Feature: domain Description: GIIM Note: maturase Location: 89626-89839 bp Feature: domain Description: GIIM Note: maturase Location: 896 26 -89839 bp Feature: gene Location: 89934-90584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90009-90474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90009-90474 bp Feature: gene Location: 90615-90794 bp Feature: gene Location: 91524-91787 bp Feature: domain Description: aroE Location: 91527-91773 bp Feature: domain Description: aroE Location: 91527-91773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-GII, GIIM (pfam08388), aroE (TIGR00507)

Seq: AXAP01000067.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_66.67_C, whole genome shotgun sequence (45769 bp)
Overview 1 RT 1: 43295-45248 bp Neighborhood of RT #1 [43295, 45343] DDE_Tnp_IS66 DDE_Tnp_IS66_C DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 43295-43558 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43298-43385 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43298-43385 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43406-43517 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43406-43517 bp Feature: gene Location: 43833-44135 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43863-44124 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43863-44124 bp Feature: gene Location: 44189-45343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44297-44951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44297 -44951 bp Feature: domain Description: GIIM Note: maturase Location: 45038-45248 bp Feature: domain Description: GIIM Note: maturase Location: 45038-45248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: AXAP01000074.1 Bradyrhizobium elkanii WSM2783 YY7DRAFT_scaffold_73.74_C, whole genome shotgun sequence (40863 bp)
Overview 1 RT 1: 7697-16384 bp Neighborhood of RT #1 [7697, 16416] Big_3_5 He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG He_PIG Big_3_5 RVT-GII LbH_gamma_CA_like Feature: gene Location: 7697-13168 bp Feature: domain Description: Big_3_5 Location: 7949-8204 bp Feature: domain Description: Big_3_5 Location: 7949-8 204 bp Feature: domain Description: He_PIG Location: 8306-8429 bp Feature: domain Description: He_PIG Location: 8 306-8 429 bp Feature: domain Description: He_PIG Location: 8579-8699 bp Feature: domain Description: He_PIG Location: 8 579-8 699 bp Feature: domain Description: He_PIG Location: 8843-8969 bp Feature: domain Description: He_PIG Location: 8 8 43-8 969 bp Feature: domain Description: He_PIG Location: 9113-9233 bp Feature: domain Description: He_PIG Location: 9113-9233 bp Feature: domain Description: He_PIG Location: 9380-9500 bp Feature: domain Description: He_PIG Location: 938 0-9500 bp Feature: domain Description: He_PIG Location: 9650-9773 bp Feature: domain Description: He_PIG Location: 9650-9773 bp Feature: domain Description: He_PIG Location: 9920-10040 bp Feature: domain Description: He_PIG Location: 9920-10040 bp Feature: domain Description: He_PIG Location: 10190-10313 bp Feature: domain Description: He_PIG Location: 10190-10313 bp Feature: domain Description: He_PIG Location: 10460-10583 bp Feature: domain Description: He_PIG Location: 10460-1058 3 bp Feature: domain Description: He_PIG Location: 10730-10856 bp Feature: domain Description: He_PIG Location: 10730-108 56 bp Feature: domain Description: He_PIG Location: 11000-11123 bp Feature: domain Description: He_PIG Location: 11000-11123 bp Feature: domain Description: He_PIG Location: 11270-11393 bp Feature: domain Description: He_PIG Location: 11270-11393 bp Feature: domain Description: He_PIG Location: 11540-11654 bp Feature: domain Description: He_PIG Location: 11540-11654 bp Feature: domain Description: Big_3_5 Location: 11741-11987 bp Feature: domain Description: Big_3_5 Location: 11741-1198 7 bp Feature: gene Location: 13591-13725 bp Feature: gene Location: 13757-14425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14390 bp Feature: gene Location: 14953-15309 bp Feature: gene Location: 15853-16416 bp Feature: domain Description: LbH_gamma_CA_like Location: 15931-16384 bp Feature: domain Description: LbH_gamma_CA_like Location: 15931-1638 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_3_5 (pfam16640), He_PIG (pfam05345), RVT-GII, LbH_gamma_CA_like (cd04645)