myRT

myRT report for GCA_000472905.1_ASM47290v1

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Seq: AXAR01000015.1 Alicyclobacillus pomorum DSM 14955 YWKDRAFT_scaffold_14.15_C, whole genome shotgun sequence (90562 bp)
Overview 1 RT 1: 17033-21491 bp Neighborhood of RT #1 [17033, 21505] IS285 Transposase_mut RVT-GII GIIM RVT_N RVT-GII ATPgrasp_YheCD Feature: gene Location: 17033-17287 bp Feature: domain Description: IS285 Location: 17039-17246 bp Feature: domain Description: IS285 Location: 1 7039-1 7246 bp Feature: gene Location: 17357-17722 bp Feature: domain Description: Transposase_mut Location: 17384-17717 bp Feature: domain Description: Transposase_mut Location: 1 7384-1 771 7 bp Feature: gene Location: 18181-18714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18187-18349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 87-1 8349 bp Feature: domain Description: GIIM Note: maturase Location: 18406-18520 bp Feature: domain Description: GIIM Note: maturase Location: 1 8406-1 8520 bp Feature: gene Location: 18662-19849 bp Feature: domain Description: RVT_N Location: 19040-19265 bp Feature: domain Description: RVT_N Location: 1 9040-1 9265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19316-19727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 6-1 9727 bp Feature: gene Location: 20315-20593 bp Feature: gene Location: 20756-21505 bp Feature: domain Description: ATPgrasp_YheCD Location: 20777-21491 bp Feature: domain Description: ATPgrasp_YheCD Location: 20777-21 491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), ATPgrasp_YheCD (pfam14398)

Seq: AXAR01000025.1 Alicyclobacillus pomorum DSM 14955 YWKDRAFT_scaffold_24.25_C, whole genome shotgun sequence (20087 bp)
Overview 1 RT 1: 16018-20079 bp Neighborhood of RT #1 [16018, 20084] RhaT EamA YyaL RVT-GII RVT-GII GIIM MhpC Feature: gene Location: 16018-16932 bp Feature: domain Description: RhaT Location: 16027-16456 bp Feature: domain Description: RhaT Location: 1602 7-16456 bp Feature: domain Description: EamA Location: 16513-16927 bp Feature: domain Description: EamA Location: 16513-1692 7 bp Feature: gene Location: 17078-17245 bp Feature: domain Description: YyaL Location: 17090-17243 bp Feature: domain Description: YyaL Location: 17090-172 43 bp Feature: gene Location: 17681-18526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18029-18521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802 9-1852 1 bp Feature: gene Location: 18542-19093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18545-18647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18545-18647 bp Feature: domain Description: GIIM Note: maturase Location: 18695-18917 bp Feature: domain Description: GIIM Note: maturase Location: 18695-18917 bp Feature: gene Location: 19195-19470 bp Feature: gene Location: 19815-20084 bp Feature: domain Description: MhpC Location: 19866-20079 bp Feature: domain Description: MhpC Location: 19866-2 0079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), EamA (pfam00892), YyaL (COG1331), RVT-GII, GIIM (pfam08388), MhpC (COG0596)

Seq: AXAR01000004.1 Alicyclobacillus pomorum DSM 14955 YWKDRAFT_scaffold_3.4_C, whole genome shotgun sequence (243678 bp)
Overview 1 RT 1: 233617-239091 bp Neighborhood of RT #1 [233617, 239102] INT_ICEBs1_C_like RVT-GII GIIM RVT_N RVT-GII LysR Feature: gene Location: 233617-234330 bp Feature: domain Description: INT_ICEBs1_C_like Location: 233734-234268 bp Feature: domain Description: INT_ICEBs1_C_like Location: 23 3 73 4-23 4268 bp Feature: gene Location: 235191-235352 bp Feature: gene Location: 235762-236469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235795-235987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 5795-23 5987 bp Feature: domain Description: GIIM Note: maturase Location: 236047-236272 bp Feature: domain Description: GIIM Note: maturase Location: 23 6047-23 6272 bp Feature: gene Location: 236454-237350 bp Feature: domain Description: RVT_N Location: 236655-236886 bp Feature: domain Description: RVT_N Location: 23 6655-23 6886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236934-237228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 693 4-23 7228 bp Feature: gene Location: 237603-237764 bp Feature: gene Location: 238221-239102 bp Feature: domain Description: LysR Location: 238224-239091 bp Feature: domain Description: LysR Location: 23 8224-23 9091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), LysR (COG0583)