myRT

myRT report for GCA_000472925.1_ASM47292v1

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Seq: AXAS01000001.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_0.1_C, whole genome shotgun sequence (484207 bp)
Overview 1 RT 1: 211253-214065 bp Neighborhood of RT #1 [211253, 214065] RVT-GII LomR Feature: gene Location: 211253-211888 bp Feature: gene Location: 212054-212392 bp Feature: gene Location: 212426-212782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212435-212645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 2435-21 2645 bp Feature: gene Location: 212961-213779 bp Feature: domain Description: LomR Location: 212964-213753 bp Feature: domain Description: LomR Location: 21 2964-21 3753 bp Feature: gene Location: 213778-214065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LomR (COG3637)

Seq: AXAS01000113.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_107.108_C, whole genome shotgun sequence (12633 bp)
Overview 1 RT 1: 1-3084 bp Neighborhood of RT #1 [1, 3084] PRK09183 RVT-GII RVT-GII Feature: gene Location: 1-183 bp Feature: domain Description: PRK09183 Location: 4-100 bp Feature: domain Description: PRK09183 Location: 4-100 bp Feature: gene Location: 348-596 bp Feature: gene Location: 694-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-12 73 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1276-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 76-1396 bp Feature: gene Location: 1898-2515 bp Feature: gene Location: 2830-3084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-GII

Seq: KI421476.1 Bradyrhizobium sp. Ec3.3 genomic scaffold YUUDRAFT_scaffold_108.109, whole genome shotgun sequence (12032 bp)
Overview 1 RT 1: 502-4590 bp Neighborhood of RT #1 [502, 4590] RVT-GII GIIM GlpC Feature: gene Location: 502-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793 -1456 bp Feature: domain Description: GIIM Note: maturase Location: 1525-1741 bp Feature: domain Description: GIIM Note: maturase Location: 1525-1741 bp Feature: gene Location: 2320-3690 bp Feature: domain Description: GlpC Location: 2374-3271 bp Feature: domain Description: GlpC Location: 23 74-3 271 bp Feature: gene Location: 4024-4590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GlpC (COG0247)

Seq: AXAS01000135.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_131.132_C, whole genome shotgun sequence (3808 bp)
Overview 1 RT 1: 464-3759 bp Neighborhood of RT #1 [464, 3759] COG3547 RVT-GII Feature: gene Location: 464-1174 bp Feature: domain Description: COG3547 Location: 479-1121 bp Feature: domain Description: COG354 7 Location: 4 79-1121 bp Feature: gene Location: 1509-1754 bp Feature: gene Location: 1874-3349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-2972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-2972 bp Feature: gene Location: 3403-3759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: AXAS01000150.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_143.144_C, whole genome shotgun sequence (2052 bp)
Overview 1 RT 1: 2-2050 bp Neighborhood of RT #1 [2, 2050] DUF772 RVT-GII RVT-GII GIIM Feature: gene Location: 2-211 bp Feature: domain Description: DUF772 Location: 8-98 bp Feature: domain Description: DUF772 Location: 8-98 bp Feature: gene Location: 633-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1065 bp Feature: gene Location: 724-1881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 4-1495 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1789 bp Feature: domain Description: GIIM Note: maturase Location: 15 73-1789 bp Feature: gene Location: 1892-2050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: KI421479.1 Bradyrhizobium sp. Ec3.3 genomic scaffold YUUDRAFT_scaffold_3.4, whole genome shotgun sequence (364202 bp)
Overview 1 RT 1: 137184-144764 bp Neighborhood of RT #1 [137184, 144853] PRK05995 INT_Cre_C RVT-GII Intron_maturas2 MPTase-PolyVal PRK07078 Toprim_3 Feature: gene Location: 137184-137966 bp Feature: domain Description: PRK05995 Location: 137199-137961 bp Feature: domain Description: PRK05995 Location: 137199-13796 1 bp Feature: gene Location: 138021-139307 bp Feature: domain Description: INT_Cre_C Location: 138951-139221 bp Feature: domain Description: INT_Cre_C Location: 138951-139221 bp Feature: gene Location: 140590-142338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140710-141541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140710-141541 bp Feature: domain Description: Intron_maturas2 Location: 141649-141934 bp Feature: domain Description: Intron_maturas2 Location: 1416 49-141934 bp Feature: gene Location: 143347-143490 bp Feature: domain Description: MPTase-PolyVal Location: 143350-143455 bp Feature: domain Description: MPTase-PolyVal Location: 143350-143455 bp Feature: gene Location: 143792-144853 bp Feature: domain Description: PRK07078 Location: 143816-144155 bp Feature: domain Description: PRK07078 Location: 143816 -144155 bp Feature: domain Description: Toprim_3 Location: 144500-144764 bp Feature: domain Description: Toprim_3 Location: 144500-14476 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05995 (enoyl-CoA hydratase; Provisional), INT_Cre_C (cd00799), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), PRK07078 (hypothetical protein; Validated), Toprim_3 (pfam13362)

Seq: AXAS01000036.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_32.33_C, whole genome shotgun sequence (106189 bp)
Overview 1 RT 1: 168-5095 bp Neighborhood of RT #1 [168, 5382] RVT-GII GIIM trans_reg_C TolBN TPR TPR TPR RlpA Feature: gene Location: 168-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-1122 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1407 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1407 bp Feature: gene Location: 2044-3603 bp Feature: domain Description: trans_reg_C Location: 2071-2332 bp Feature: domain Description: trans_reg_C Location: 207 1-2332 bp Feature: domain Description: TolBN Location: 2401-2806 bp Feature: domain Description: TolBN Location: 2401-2806 bp Feature: domain Description: TPR Location: 2920-3127 bp Feature: domain Description: TPR Location: 2920-3127 bp Feature: domain Description: TPR Location: 3148-3328 bp Feature: domain Description: TPR Location: 3148-3328 bp Feature: domain Description: TPR Location: 3328-3499 bp Feature: domain Description: TPR Location: 3328-3499 bp Feature: gene Location: 4636-5382 bp Feature: domain Description: RlpA Location: 4753-5095 bp Feature: domain Description: RlpA Location: 47 53-5095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), trans_reg_C (cd00383), TolBN (COG5616), TPR (smart00028), RlpA (COG0797)

Seq: AXAS01000042.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_37.38_C, whole genome shotgun sequence (89660 bp)
Overview 1 RT 1: 3617-7122 bp Neighborhood of RT #1 [3617, 7151] Acetyltransf_10 RVT-GII LysR Feature: gene Location: 3617-3877 bp Feature: gene Location: 3973-4560 bp Feature: domain Description: Acetyltransf_10 Location: 4336-4549 bp Feature: domain Description: Acetyltransf_10 Location: 4336-4549 bp Feature: gene Location: 5478-5879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5511-5706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5511-5706 bp Feature: gene Location: 5932-6174 bp Feature: gene Location: 6264-7151 bp Feature: domain Description: LysR Location: 6267-7122 bp Feature: domain Description: LysR Location: 6267-7122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII, LysR (COG0583)

Seq: AXAS01000007.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_5.6_C, whole genome shotgun sequence (258331 bp)
Overview 1 RT 1: 239-1638 bp Neighborhood of RT #1 [239, 1638] RVT-GII Feature: gene Location: 239-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-737 bp Feature: gene Location: 998-1327 bp Feature: gene Location: 1381-1638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KI421481.1 Bradyrhizobium sp. Ec3.3 genomic scaffold YUUDRAFT_scaffold_74.75, whole genome shotgun sequence (26680 bp)
Overview 1 RT 1: 202-4154 bp Neighborhood of RT #1 [202, 4207] RVT-GII RVT-GII GIIM DUF772 DDE_Tnp_1_6 Feature: gene Location: 202-456 bp Feature: gene Location: 1187-1390 bp Feature: gene Location: 1441-2262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1447-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1447-1927 bp Feature: gene Location: 2455-2748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-2680 bp Feature: gene Location: 2795-3070 bp Feature: domain Description: GIIM Note: maturase Location: 2807-2978 bp Feature: domain Description: GIIM Note: maturase Location: 2807-2978 bp Feature: gene Location: 3128-4207 bp Feature: domain Description: DUF772 Location: 3149-3260 bp Feature: domain Description: DUF772 Location: 3149-3260 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3986-4154 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3986-4154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)

Seq: AXAS01000085.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_79.80_C, whole genome shotgun sequence (25318 bp)
Overview 1 RT 1: 22548-25059 bp Neighborhood of RT #1 [22548, 25151] RVT-GII GIIM Feature: gene Location: 22548-22718 bp Feature: gene Location: 22837-23367 bp Feature: gene Location: 23820-25151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24111-24774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2411 1-24774 bp Feature: domain Description: GIIM Note: maturase Location: 24843-25059 bp Feature: domain Description: GIIM Note: maturase Location: 24843-25059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AXAS01000086.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_80.81_C, whole genome shotgun sequence (25108 bp)
Overview 1 RT 1: 22411-24515 bp Neighborhood of RT #1 [22411, 24607] PBP1_ABC_uncharacterized_transporter RVT-GII GIIM Feature: gene Location: 22411-22602 bp Feature: gene Location: 22964-23155 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 23033-23123 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 23033-2312 3 bp Feature: gene Location: 23276-24607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23567-24230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23567-24230 bp Feature: domain Description: GIIM Note: maturase Location: 24299-24515 bp Feature: domain Description: GIIM Note: maturase Location: 24299-24515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_uncharacterized_transporter, RVT-GII, GIIM (pfam08388)

Seq: AXAS01000097.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_91.92_C, whole genome shotgun sequence (19377 bp)
Overview 1 RT 1: 16714-19370 bp Neighborhood of RT #1 [16714, 19370] RVT-GII Intron_maturas2 Feature: gene Location: 16714-17397 bp Feature: gene Location: 17438-17620 bp Feature: gene Location: 17779-19068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17782-18304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17782-18304 bp Feature: domain Description: Intron_maturas2 Location: 18415-18697 bp Feature: domain Description: Intron_maturas2 Location: 18415-18697 bp Feature: gene Location: 19125-19370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: AXAS01000102.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_96.97_C, whole genome shotgun sequence (16454 bp)
Overview 1 RT 1: 58-3436 bp 2 RT 2: 7565-9515 bp Neighborhood of RT #1 [58, 3453] RVT-GII GIIM urea_t_UrtC_arc urea_t_UrtB_arc Neighborhood of RT #2 [7565, 9589] RVT-GII GIIM CBS_pair_bac_euk Feature: gene Location: 58-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1012 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1294 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1294 bp Feature: gene Location: 1595-2596 bp Feature: domain Description: urea_t_UrtC_arc Location: 1622-2564 bp Feature: domain Description: urea_t_UrtC_arc Location: 1622-2564 bp Feature: gene Location: 2593-3453 bp Feature: domain Description: urea_t_UrtB_arc Location: 2620-3436 bp Feature: domain Description: urea_t_UrtB_arc Location: 2620-3436 bp Feature: gene Location: 7565-7780 bp Feature: gene Location: 7819-8064 bp Feature: gene Location: 8115-8423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8181-8367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8181-8367 bp Feature: gene Location: 8440-8823 bp Feature: domain Description: GIIM Note: maturase Location: 8446-8650 bp Feature: domain Description: GIIM Note: maturase Location: 8446-8650 bp Feature: gene Location: 9113-9589 bp Feature: domain Description: CBS_pair_bac_euk Location: 9185-9515 bp Feature: domain Description: CBS_pair_bac_euk Location: 9185-9515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), urea_t_UrtC_arc (TIGR03727), urea_t_UrtB_arc (TIGR03622), CBS_pair_bac_euk (cd04623)

Seq: AXAS01000103.1 Bradyrhizobium sp. Ec3.3 YUUDRAFT_scaffold_97.98_C, whole genome shotgun sequence (15901 bp)
Overview 1 RT 1: 1698-3925 bp Neighborhood of RT #1 [1698, 3925] COG3547 RVT-GII Feature: gene Location: 1698-1988 bp Feature: domain Description: COG3547 Location: 1701-1980 bp Feature: domain Description: COG3547 Location: 1701-1980 bp Feature: gene Location: 2384-2557 bp Feature: gene Location: 2734-3159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3091 bp Feature: gene Location: 3438-3647 bp Feature: gene Location: 3698-3925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII