myRT

myRT report for GCA_000472985.1_ASM47298v1

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Seq: AXAV01000039.1 Bradyrhizobium japonicum USDA 6 YUIDRAFT_scaffold_36.37_C, whole genome shotgun sequence (37144 bp)
Overview 1 RT 1: 27534-30890 bp Neighborhood of RT #1 [27534, 31012] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 27534-27668 bp Feature: gene Location: 28287-28427 bp Feature: gene Location: 28433-29731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28688-29342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28688-29342 bp Feature: domain Description: GIIM Note: maturase Location: 29423-29651 bp Feature: domain Description: GIIM Note: maturase Location: 29423-29651 bp Feature: gene Location: 29857-30162 bp Feature: domain Description: HTH_Tnp_1 Location: 29914-30121 bp Feature: domain Description: HTH_Tnp_1 Location: 2991 4-301 21 bp Feature: gene Location: 30140-31012 bp Feature: domain Description: Tra5 Location: 30182-30890 bp Feature: domain Description: Tra5 Location: 301 82-30890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AXAV01000041.1 Bradyrhizobium japonicum USDA 6 YUIDRAFT_scaffold_38.39_C, whole genome shotgun sequence (29489 bp)
Overview 1 RT 1: 23803-29488 bp Neighborhood of RT #1 [23803, 29488] RVT-GII RVT-GII Feature: gene Location: 23803-26118 bp Feature: gene Location: 26194-26340 bp Feature: gene Location: 26411-27793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26738-27428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6738-2 742 8 bp Feature: gene Location: 28155-28370 bp Feature: gene Location: 28854-29273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29013-29109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9013-2 9109 bp Feature: gene Location: 29330-29488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXAV01000042.1 Bradyrhizobium japonicum USDA 6 YUIDRAFT_scaffold_39.40_C, whole genome shotgun sequence (25768 bp)
Overview 1 RT 1: 4239-8717 bp Neighborhood of RT #1 [4239, 8717] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4239-4907 bp Feature: domain Description: PHA02518 Location: 4248-4845 bp Feature: domain Description: PHA02518 Location: 4248-4845 bp Feature: gene Location: 5351-6187 bp Feature: domain Description: LomR Location: 5387-6098 bp Feature: domain Description: LomR Location: 53 87-6098 bp Feature: gene Location: 6474-7451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6483-7077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6483 -7077 bp Feature: domain Description: GIIM Note: maturase Location: 7143-7365 bp Feature: domain Description: GIIM Note: maturase Location: 7143 -73 65 bp Feature: gene Location: 7688-8413 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7706-8141 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7706-8141 bp Feature: gene Location: 8541-8717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02518 (ParA-like protein; Provisional), LomR (COG3637), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: AXAV01000051.1 Bradyrhizobium japonicum USDA 6 YUIDRAFT_scaffold_48.49_C, whole genome shotgun sequence (14757 bp)
Overview 1 RT 1: 1409-7499 bp Neighborhood of RT #1 [1409, 7504] LptD RVT-GII GIIM PRK06215 Feature: gene Location: 1409-3856 bp Feature: domain Description: LptD Location: 1583-3779 bp Feature: domain Description: LptD Location: 1583-3779 bp Feature: gene Location: 3874-4065 bp Feature: gene Location: 4657-5838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4858-5515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 858-5515 bp Feature: domain Description: GIIM Note: maturase Location: 5590-5797 bp Feature: domain Description: GIIM Note: maturase Location: 5590-5797 bp Feature: gene Location: 6033-6323 bp Feature: gene Location: 6767-7504 bp Feature: domain Description: PRK06215 Location: 6776-7499 bp Feature: domain Description: PRK06215 Location: 6776-74 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT-GII, GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional)

Seq: AXAV01000078.1 Bradyrhizobium japonicum USDA 6 YUIDRAFT_scaffold_75.76_C, whole genome shotgun sequence (2568 bp)
Overview 1 RT 1: 270-2084 bp Neighborhood of RT #1 [270, 2084] RVT-GII RVT-GII Feature: gene Location: 270-1028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-65 1 bp Feature: gene Location: 989-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-125 0 bp Feature: gene Location: 1383-1685 bp Feature: gene Location: 1755-2084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII