myRT

myRT report for GCA_000473125.1_ASM47312v1

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Seq: KI421499.1 Bradyrhizobium genosp. SA-4 str. CB756 genomic scaffold BrageDRAFT_scaffold1.1, whole genome shotgun sequence (9823581 bp)
Overview 1 RT 1: 6166073-6170535 bp 2 RT 2: 6298302-6301356 bp Neighborhood of RT #1 [6166073, 6170612] PRK09039 COG3436 RVT-GII GIIM DDE_Tnp_IS66 Phage_int_SAM_1 INT_RitC_C_like Neighborhood of RT #2 [6298302, 6301409] TnpB_IS66 Transposase_20 RVT-GII CcmA Feature: gene Location: 6166073-6166906 bp Feature: domain Description: PRK09039 Location: 6166079-6166382 bp Feature: domain Description: PRK09039 Location: 61 66079-61 66382 bp Feature: domain Description: COG3436 Location: 6166400-6166862 bp Feature: domain Description: COG3436 Location: 61 66400-61 66862 bp Feature: gene Location: 6167078-6167206 bp Feature: gene Location: 6168005-6168673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6168011-6168281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 6801 1 -61 68281 bp Feature: domain Description: GIIM Note: maturase Location: 6168368-6168578 bp Feature: domain Description: GIIM Note: maturase Location: 61 68368-61 68578 bp Feature: gene Location: 6168726-6169298 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6168756-6169248 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61 68756-61 69248 bp Feature: gene Location: 6169611-6170612 bp Feature: domain Description: Phage_int_SAM_1 Location: 6169656-6169899 bp Feature: domain Description: Phage_int_SAM_1 Location: 61 69656-61 69899 bp Feature: domain Description: INT_RitC_C_like Location: 6169992-6170535 bp Feature: domain Description: INT_RitC_C_like Location: 61 69992-61 70535 bp Feature: gene Location: 6298302-6298613 bp Feature: domain Description: TnpB_IS66 Location: 6298383-6298587 bp Feature: domain Description: TnpB_IS66 Location: 6298383-6298587 bp Feature: gene Location: 6298864-6299202 bp Feature: domain Description: Transposase_20 Location: 6298882-6298990 bp Feature: domain Description: Transposase_20 Location: 6298882-6298990 bp Feature: gene Location: 6299141-6299470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6299198-6299300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62991 98-6299300 bp Feature: gene Location: 6299606-6299803 bp Feature: gene Location: 6300609-6301409 bp Feature: domain Description: CcmA Location: 6300678-6301356 bp Feature: domain Description: CcmA Location: 6300678-6301 356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09039 (peptidoglycan -binding protein), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), TnpB_IS66 (pfam05717), Transposase_20 (pfam02371), CcmA (COG4133)