myRT

myRT report for GCA_000473465.1_ASM47346v1

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Seq: KI421529.1 Burkholderia sprentiae WSM5005 genomic scaffold Bur5005DRAFT_BWD.1, whole genome shotgun sequence (839946 bp)
Overview 1 RT 1: 218702-223048 bp 2 RT 2: 231130-234853 bp 3 RT 3: 276514-280520 bp Neighborhood of RT #1 [218702, 223059] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [231130, 235026] DUF4372 RVT-GII nodulat_NodB nodulat_NodC Neighborhood of RT #3 [276514, 280520] IclR IclR nifA RVT-GII GIIM Feature: gene Location: 218702-218875 bp Feature: gene Location: 219538-220002 bp Feature: domain Description: PHA02517 Location: 219541-219976 bp Feature: domain Description: PHA0251 7 Location: 21 9541 -21 9976 bp Feature: gene Location: 220120-221652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220393-221131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220393-221 1 31 bp Feature: domain Description: GIIM Note: maturase Location: 221245-221404 bp Feature: domain Description: GIIM Note: maturase Location: 221 245-221 404 bp Feature: gene Location: 222280-222597 bp Feature: domain Description: PHA02517 Location: 222298-222562 bp Feature: domain Description: PHA0251 7 Location: 222298-222562 bp Feature: gene Location: 222736-223059 bp Feature: domain Description: InsE Location: 222754-223048 bp Feature: domain Description: InsE Location: 222754-223048 bp Feature: gene Location: 231130-231342 bp Feature: gene Location: 231536-232270 bp Feature: domain Description: DUF4372 Location: 231548-231755 bp Feature: domain Description: DUF4372 Location: 231 548-231 755 bp Feature: gene Location: 232421-232603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232427-232595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232427-232595 bp Feature: gene Location: 232994-233653 bp Feature: domain Description: nodulat_NodB Location: 233057-233642 bp Feature: domain Description: nodulat_NodB Location: 233057-233642 bp Feature: gene Location: 233668-235026 bp Feature: domain Description: nodulat_NodC Location: 233677-234853 bp Feature: domain Description: nodulat_NodC Location: 233677-234853 bp Feature: gene Location: 276514-277014 bp Feature: domain Description: IclR Location: 276523-276844 bp Feature: domain Description: IclR Location: 276523-276844 bp Feature: domain Description: IclR Location: 276862-277003 bp Feature: domain Description: IclR Location: 276862-277003 bp Feature: gene Location: 277503-279398 bp Feature: domain Description: nifA Location: 277719-279396 bp Feature: domain Description: nifA Location: 27771 9-279396 bp Feature: gene Location: 279492-279737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279555-279693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279555-279693 bp Feature: gene Location: 279805-280071 bp Feature: domain Description: GIIM Note: maturase Location: 279811-279931 bp Feature: domain Description: GIIM Note: maturase Location: 27981 1 -279931 bp Feature: gene Location: 280212-280520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DUF4372 (pfam14294), nodulat_NodB (TIGR04243), nodulat_NodC (TIGR04242), IclR (pfam01614), nifA (TIGR01817)

Seq: KI421531.1 Burkholderia sprentiae WSM5005 genomic scaffold Bur5005DRAFT_BWD.4, whole genome shotgun sequence (2044220 bp)
Overview 1 RT 1: 2001941-2006818 bp Neighborhood of RT #1 [2001941, 2006847] DadA DUF2968 RVT-GII DDE_Tnp_1_2 Feature: gene Location: 2001941-2003230 bp Feature: domain Description: DadA Location: 2001983-2003207 bp Feature: domain Description: DadA Location: 2 001983-2 0032 07 bp Feature: gene Location: 2003409-2003993 bp Feature: domain Description: DUF2968 Location: 2003418-2003604 bp Feature: domain Description: DUF2 968 Location: 2 003418-2 003604 bp Feature: gene Location: 2004134-2005417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004362-2005049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004362 -2 005049 bp Feature: gene Location: 2006103-2006399 bp Feature: gene Location: 2006467-2006847 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2006584-2006818 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2 006584-2 006818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DadA (COG0665), DUF2968 (pfam11180), RVT-GII, DDE_Tnp_1_2 (pfam13586)

Seq: KI421533.1 Burkholderia sprentiae WSM5005 genomic scaffold Bur5005DRAFT_BWD.6, whole genome shotgun sequence (178594 bp)
Overview 1 RT 1: 113999-118906 bp Neighborhood of RT #1 [113999, 118906] RVT-UG9 PRK05755 PRK14975 Feature: gene Location: 113999-114235 bp Feature: gene Location: 114307-114597 bp Feature: gene Location: 115111-116823 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 115393-116029 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1153 93 -116029 bp Feature: gene Location: 116816-118420 bp Feature: domain Description: PRK05755 Location: 117125-117383 bp Feature: domain Description: PRK05755 Location: 117125-1173 83 bp Feature: domain Description: PRK14975 Location: 117602-118265 bp Feature: domain Description: PRK14975 Location: 117602-118265 bp Feature: gene Location: 118553-118906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK05755 (DNA polymerase I; Provisional), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)