myRT

myRT report for GCA_000474635.1_Kp303K1.0

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Seq: AVAN01000040.1 (39101 bp)
Overview 1 RT 1: 36719-38650 bp Neighborhood of RT #1 [36719, 39042] PRK10276 RVT-GII Feature: gene Location: 36719-37150 bp Feature: domain Description: PRK10276 Location: 36770-37133 bp Feature: domain Description: PRK1 0276 Location: 36770-371 33 bp Feature: gene Location: 37346-37558 bp Feature: gene Location: 37633-39042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37960-38650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37960-38650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: AVAN01000003.1 (10836 bp)
Overview 1 RT 1: 1-3590 bp Neighborhood of RT #1 [1, 3727] RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 1-192 bp Feature: gene Location: 346-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1441 bp Feature: gene Location: 2079-3053 bp Feature: domain Description: StbA Location: 2085-3030 bp Feature: domain Description: StbA Location: 2 085-3030 bp Feature: gene Location: 3056-3727 bp Feature: domain Description: Plasmid_stab_B Location: 3071-3278 bp Feature: domain Description: Plasmid_stab_B Location: 3071-32 78 bp Feature: domain Description: Plasmid_stab_B Location: 3383-3590 bp Feature: domain Description: Plasmid_stab_B Location: 3383-3590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: AVAN01000008.1 (135849 bp)
Overview 1 RT 1: 133409-135398 bp Neighborhood of RT #1 [133409, 135790] Q RVT-GII Feature: gene Location: 133409-133807 bp Feature: domain Description: Q Location: 133412-133799 bp Feature: domain Description: Q Location: 13 3 412-13 3 799 bp Feature: gene Location: 134303-135790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134708-135398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 4708-13 53 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-GII

Seq: AVAN01000047.1 (20906 bp)
Overview 1 RT 1: 18106-20903 bp Neighborhood of RT #1 [18106, 20903] RVT-GII Feature: gene Location: 18106-18276 bp Feature: gene Location: 18610-18840 bp Feature: gene Location: 19074-20561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19479-20169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 79-20169 bp Feature: gene Location: 20715-20903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AVAN01000004.1 (20249 bp)
Overview 1 RT 1: 6635-10964 bp Neighborhood of RT #1 [6635, 11089] PRK13746 N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 6635-7423 bp Feature: domain Description: PRK13746 Location: 6638-7415 bp Feature: domain Description: PRK13746 Location: 6638-7415 bp Feature: gene Location: 7493-8047 bp Feature: domain Description: N6_acetyl_AAC6 Location: 7496-8045 bp Feature: domain Description: N6_acetyl_AAC6 Location: 7496-8045 bp Feature: gene Location: 8666-10021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8960-9584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8960-95 84 bp Feature: domain Description: GIIM Note: maturase Location: 9623-9842 bp Feature: domain Description: GIIM Note: maturase Location: 9623-9842 bp Feature: gene Location: 10102-10728 bp Feature: domain Description: Arr-ms Location: 10336-10642 bp Feature: domain Description: Arr-ms Location: 10336-10642 bp Feature: gene Location: 10727-11089 bp Feature: domain Description: PRK15417 Location: 10730-10964 bp Feature: domain Description: PRK15 417 Location: 10730-10964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13746 (aminoglycoside resistance protein; Provisional), N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), Arr-ms (pfam12120), PRK15417 (integron integrase)

Seq: AVAN01000015.1 (1071424 bp)
Overview 1 RT 1: 1069021-1070973 bp Neighborhood of RT #1 [1069021, 1071365] DinI RVT-GII Feature: gene Location: 1069021-1069263 bp Feature: domain Description: DinI Location: 1069072-1069252 bp Feature: domain Description: DinI Location: 106 9072-106 9252 bp Feature: gene Location: 1069278-1069424 bp Feature: gene Location: 1069878-1071365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070283-1070973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070283-1070973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII

Seq: AVAN01000046.1 (314609 bp)
Overview 1 RT 1: 274199-279479 bp 2 RT 2: 312166-314606 bp Neighborhood of RT #1 [274199, 279508] umuC PRK10276 RVT-GII PinE Neighborhood of RT #2 [312166, 314606] PRK10597 RVT-GII Feature: gene Location: 274199-275464 bp Feature: domain Description: umuC Location: 274202-275462 bp Feature: domain Description: umuC Location: 27 4202-27 5462 bp Feature: gene Location: 275466-275885 bp Feature: domain Description: PRK10276 Location: 275469-275880 bp Feature: domain Description: PRK1027 6 Location: 27 5469-27 5880 bp Feature: gene Location: 275863-277449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276265-276955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 6265-27 6955 bp Feature: gene Location: 277458-277625 bp Feature: gene Location: 278930-279508 bp Feature: domain Description: PinE Location: 278933-279479 bp Feature: domain Description: PinE Location: 27 8933-27 947 9 bp Feature: gene Location: 312166-312387 bp Feature: gene Location: 312465-312698 bp Feature: domain Description: PRK10597 Location: 312468-312693 bp Feature: domain Description: PRK10597 Location: 312468-312693 bp Feature: gene Location: 312777-314261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313179-313869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31317 9-313869 bp Feature: gene Location: 314418-314606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PinE (COG1961), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: AVAN01000049.1 (35195 bp)
Overview 1 RT 1: 30546-34860 bp Neighborhood of RT #1 [30546, 34895] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 30546-30779 bp Feature: gene Location: 30867-31421 bp Feature: domain Description: N6_acetyl_AAC6 Location: 30870-31419 bp Feature: domain Description: N6_acetyl_AAC6 Location: 308 70-31419 bp Feature: gene Location: 32142-33395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32334-32958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32334-32958 bp Feature: domain Description: GIIM Note: maturase Location: 32997-33216 bp Feature: domain Description: GIIM Note: maturase Location: 32997-33216 bp Feature: gene Location: 33476-34144 bp Feature: domain Description: Arr-ms Location: 33752-34058 bp Feature: domain Description: Arr-ms Location: 33752-34058 bp Feature: gene Location: 34101-34895 bp Feature: domain Description: PRK15417 Location: 34104-34860 bp Feature: domain Description: PRK15417 Location: 34104-348 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), Arr-ms (pfam12120), PRK15417 (integron integrase)

Seq: AVAN01000048.1 (11837 bp)
Overview 1 RT 1: 1433-5526 bp Neighborhood of RT #1 [1433, 5591] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 1433-2509 bp Feature: domain Description: COG3547 Location: 1472-2393 bp Feature: domain Description: COG3547 Location: 1472-239 3 bp Feature: gene Location: 2758-2964 bp Feature: gene Location: 3051-4574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324-4056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324-4056 bp Feature: domain Description: GIIM Note: maturase Location: 4131-4329 bp Feature: domain Description: GIIM Note: maturase Location: 4131-4329 bp Feature: gene Location: 4528-4953 bp Feature: gene Location: 5166-5591 bp Feature: domain Description: PHA02517 Location: 5190-5526 bp Feature: domain Description: PHA02517 Location: 519 0-5526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AVAN01000042.1 (440009 bp)
Overview 1 RT 1: 113879-119604 bp Neighborhood of RT #1 [113879, 119822] FimC FimD RVT-UG4 Integrase_1 Feature: gene Location: 113879-114607 bp Feature: domain Description: FimC Location: 113927-114590 bp Feature: domain Description: FimC Location: 113927-114590 bp Feature: gene Location: 114639-117248 bp Feature: domain Description: FimD Location: 114696-117237 bp Feature: domain Description: FimD Location: 114696-117237 bp Feature: gene Location: 117248-118588 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 117656-118100 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 117656-11810 0 bp Feature: gene Location: 118585-119325 bp Feature: gene Location: 119382-119822 bp Feature: domain Description: Integrase_1 Location: 119388-119604 bp Feature: domain Description: Integrase_1 Location: 119388-119604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835)

Seq: AVAN01000018.1 (15427 bp)
Overview 1 RT 1: 61-2362 bp Neighborhood of RT #1 [61, 2376] RVT-GII PRK10276 Feature: gene Location: 61-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-11 56 bp Feature: gene Location: 1554-1721 bp Feature: gene Location: 1951-2376 bp Feature: domain Description: PRK10276 Location: 1954-2362 bp Feature: domain Description: PRK10276 Location: 1954-2362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)