myRT

myRT report for GCA_000478195.2_ASM47819v2

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Seq: AUZM01000002.1 (200446 bp)
Overview 1 RT 1: 89225-97785 bp Neighborhood of RT #1 [89225, 97805] DUF1848 RVT-UG25 dCache_1 PRK10549 KOG4171 XFP Feature: gene Location: 89225-90193 bp Feature: domain Description: DUF1848 Location: 89234-90035 bp Feature: domain Description: DUF1 848 Location: 89234-90035 bp Feature: gene Location: 90253-91071 bp Feature: gene Location: 91077-93338 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 91710-92118 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 91 71 0-921 1 8 bp Feature: gene Location: 93421-95424 bp Feature: domain Description: dCache_1 Location: 93571-94432 bp Feature: domain Description: dCache_1 Location: 93571 -94432 bp Feature: domain Description: PRK10549 Location: 94474-94690 bp Feature: domain Description: PRK1 0549 Location: 94474-94690 bp Feature: domain Description: KOG4171 Location: 94690-95419 bp Feature: domain Description: KOG41 71 Location: 94690-9541 9 bp Feature: gene Location: 95592-97805 bp Feature: domain Description: XFP Location: 95619-97785 bp Feature: domain Description: XFP Location: 9561 9-97785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1848 (pfam08902), RVT-UG25, dCache_1 (pfam02743), PRK10549 (two-component system sensor histidine kinase BaeS), KOG4171 (KOG4171, Adenylate/guanylate kinase ), XFP (pfam03894)

Seq: AUZM01000148.1 (3507 bp)
Overview 1 RT 1: 487-3481 bp Neighborhood of RT #1 [487, 3504] RVT_N RVT-GII RVT-GII GIIM McrA InsQ Feature: gene Location: 487-669 bp Feature: gene Location: 696-833 bp Feature: gene Location: 1052-1855 bp Feature: domain Description: RVT_N Location: 1091-1337 bp Feature: domain Description: RVT_N Location: 1091-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-1796 bp Feature: gene Location: 1884-2807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2 082 bp Feature: domain Description: GIIM Note: maturase Location: 2184-2406 bp Feature: domain Description: GIIM Note: maturase Location: 2 184-2 406 bp Feature: domain Description: McrA Location: 2454-2757 bp Feature: domain Description: McrA Location: 2 454-2 757 bp Feature: gene Location: 2791-3504 bp Feature: domain Description: InsQ Location: 2971-3481 bp Feature: domain Description: InsQ Location: 2 971-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675)

Seq: AUZM01000161.1 (2263 bp)
Overview 1 RT 1: 627-2244 bp Neighborhood of RT #1 [627, 2255] RVT_N RVT-GII GIIM McrA Feature: gene Location: 627-2255 bp Feature: domain Description: RVT_N Location: 657-903 bp Feature: domain Description: RVT_N Location: 657-903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1584 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1905 bp Feature: domain Description: McrA Location: 1995-2244 bp Feature: domain Description: McrA Location: 1995-2244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AUZM01000084.1 (24339 bp)
Overview 1 RT 1: 2-2728 bp Neighborhood of RT #1 [2, 2742] InsQ RVT_N RVT-GII PRK13922 GlcD GlcD Feature: gene Location: 2-166 bp Feature: domain Description: InsQ Location: 8-89 bp Feature: domain Description: InsQ Location: 8-89 bp Feature: gene Location: 198-656 bp Feature: domain Description: RVT_N Location: 204-291 bp Feature: domain Description: RVT_N Location: 204 -291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-64 2 bp Feature: gene Location: 873-1103 bp Feature: domain Description: PRK13922 Location: 921-1062 bp Feature: domain Description: PRK13922 Location: 921-1062 bp Feature: gene Location: 1390-2742 bp Feature: domain Description: GlcD Location: 1543-2104 bp Feature: domain Description: GlcD Location: 154 3-2104 bp Feature: domain Description: GlcD Location: 2131-2728 bp Feature: domain Description: GlcD Location: 2131-2728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, PRK13922 (rod shape-determining protein MreC; Provisional), GlcD (COG0277)

Seq: AUZM01000003.1 (193525 bp)
Overview 1 RT 1: 89603-95463 bp Neighborhood of RT #1 [89603, 95768] YjbI KOG1665 PPK2_rel_1 RVT_N RVT-GII GIIM McrA YeeA Feature: gene Location: 89603-90205 bp Feature: domain Description: YjbI Location: 89651-89978 bp Feature: domain Description: YjbI Location: 8965 1-89978 bp Feature: domain Description: KOG1665 Location: 90008-90179 bp Feature: domain Description: KOG1665 Location: 90008-90179 bp Feature: gene Location: 90788-91000 bp Feature: domain Description: PPK2_rel_1 Location: 90791-90962 bp Feature: domain Description: PPK2_rel_1 Location: 90791-90962 bp Feature: gene Location: 91169-92911 bp Feature: domain Description: RVT_N Location: 91214-91460 bp Feature: domain Description: RVT_N Location: 91214-91460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91502-92180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915 02-92180 bp Feature: domain Description: GIIM Note: maturase Location: 92282-92507 bp Feature: domain Description: GIIM Note: maturase Location: 92282-925 07 bp Feature: domain Description: McrA Location: 92591-92867 bp Feature: domain Description: McrA Location: 925 91-92867 bp Feature: gene Location: 93231-93419 bp Feature: gene Location: 93624-95768 bp Feature: domain Description: YeeA Location: 94347-95463 bp Feature: domain Description: YeeA Location: 94347-95 463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbI (COG2346), KOG1665 (KOG1665, AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats ), PPK2_rel_1 (TIGR03709), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YeeA (COG1002)

Seq: AUZM01000263.1 (928 bp)
Overview 1 RT 1: 1-928 bp Neighborhood of RT #1 [1, 927] RVT-GII GIIM McrA Feature: gene Location: 1-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-292 bp Feature: domain Description: GIIM Note: maturase Location: 394-619 bp Feature: domain Description: GIIM Note: maturase Location: 394-6 19 bp Feature: domain Description: McrA Location: 703-928 bp Feature: domain Description: McrA Location: 703-928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AUZM01000043.1 (52913 bp)
Overview 1 RT 1: 47903-51783 bp Neighborhood of RT #1 [47903, 51797] InsQ HTH_OrfB_IS605 RVT_N RVT-GII GIIM McrA Y1_Tnp Feature: gene Location: 47903-48589 bp Feature: domain Description: InsQ Location: 47921-48488 bp Feature: domain Description: InsQ Location: 47 921-48488 bp Feature: gene Location: 48747-49004 bp Feature: domain Description: HTH_OrfB_IS605 Location: 48813-48918 bp Feature: domain Description: HTH_OrfB_IS605 Location: 48813-48918 bp Feature: gene Location: 49006-50763 bp Feature: domain Description: RVT_N Location: 49039-49285 bp Feature: domain Description: RVT_N Location: 49039-49285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49327-50020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49327 -50020 bp Feature: domain Description: GIIM Note: maturase Location: 50119-50353 bp Feature: domain Description: GIIM Note: maturase Location: 50119-50353 bp Feature: domain Description: McrA Location: 50443-50728 bp Feature: domain Description: McrA Location: 50443-507 28 bp Feature: gene Location: 51143-51403 bp Feature: gene Location: 51564-51797 bp Feature: domain Description: Y1_Tnp Location: 51585-51783 bp Feature: domain Description: Y1_Tnp Location: 51585-517 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), HTH_OrfB_IS605 (pfam12323), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Y1_Tnp (pfam01797)

Seq: AUZM01000083.1 (24381 bp)
Overview 1 RT 1: 2-1401 bp Neighborhood of RT #1 [2, 1401] Y1_Tnp RVT-GII Feature: gene Location: 2-208 bp Feature: domain Description: Y1_Tnp Location: 8-182 bp Feature: domain Description: Y1_Tnp Location: 8 -18 2 bp Feature: gene Location: 255-395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-38 7 bp Feature: gene Location: 419-706 bp Feature: gene Location: 1267-1401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RVT-GII