myRT

myRT report for GCA_000478465.2_Pseu_aeru_Stone_130_V1

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Seq: KI517348.1 (6160752 bp)
Overview 1 RT 1: 532166-538041 bp 2 RT 2: 812386-819862 bp 3 RT 3: 2834565-2843409 bp 4 RT 4: 4125255-4131120 bp Neighborhood of RT #1 [532166, 538085] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF resist_ArsH Neighborhood of RT #2 [812386, 820149] HTH_Tnp_1 Tra5 RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Neighborhood of RT #3 [2834565, 2843417] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #4 [4125255, 4131120] conj_PilL HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 532166-532471 bp Feature: gene Location: 532608-533663 bp Feature: domain Description: DEXHc_Snf Location: 532827-533082 bp Feature: domain Description: DEXHc_Snf Location: 532827-533082 bp Feature: gene Location: 534260-535978 bp Feature: domain Description: RVT_N Location: 534317-534554 bp Feature: domain Description: RVT_N Location: 53431 7-534554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534605-535256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534605-535256 bp Feature: domain Description: GIIM Note: maturase Location: 535310-535541 bp Feature: domain Description: GIIM Note: maturase Location: 53531 0-535541 bp Feature: domain Description: HNHc Note: nucleases Location: 535775-535931 bp Feature: domain Description: HNHc Note: nucleases Location: 535775-535931 bp Feature: gene Location: 536064-537305 bp Feature: domain Description: KOG0389 Location: 536079-536199 bp Feature: domain Description: KOG0389 Location: 536079-5361 99 bp Feature: domain Description: SF2_C_SNF Location: 536745-537141 bp Feature: domain Description: SF2_C_SNF Location: 536745-5371 41 bp Feature: gene Location: 537363-538085 bp Feature: domain Description: resist_ArsH Location: 537387-538041 bp Feature: domain Description: resist_ArsH Location: 537387-538041 bp Feature: gene Location: 812386-812649 bp Feature: domain Description: HTH_Tnp_1 Location: 812392-812596 bp Feature: domain Description: HTH_Tnp_1 Location: 81 2392-81 2596 bp Feature: gene Location: 812673-813524 bp Feature: domain Description: Tra5 Location: 812763-813465 bp Feature: domain Description: Tra5 Location: 81 2763-81 3465 bp Feature: gene Location: 813618-816098 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 813621-814050 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81 3621 -81 4050 bp Feature: domain Description: nitrilase Location: 815412-815994 bp Feature: domain Description: nitrilase Location: 81 541 2-81 5994 bp Feature: gene Location: 816468-817133 bp Feature: domain Description: COG4127 Location: 816471-817122 bp Feature: domain Description: COG41 27 Location: 81 6471 -81 71 22 bp Feature: gene Location: 818398-820149 bp Feature: domain Description: restrict_AAA_1 Location: 818401-819148 bp Feature: domain Description: restrict_AAA_1 Location: 81 8401 -81 91 48 bp Feature: domain Description: restrict_AAA_1 Location: 819475-819862 bp Feature: domain Description: restrict_AAA_1 Location: 81 9475-81 9862 bp Feature: gene Location: 2834565-2835239 bp Feature: domain Description: NTP_transferase_like_1 Location: 2834571-2835210 bp Feature: domain Description: NTP_transferase_like_1 Location: 2834571 -283521 0 bp Feature: gene Location: 2835236-2836252 bp Feature: domain Description: COG3178 Location: 2835239-2836238 bp Feature: domain Description: COG31 78 Location: 2835239-2836238 bp Feature: gene Location: 2837525-2839237 bp Feature: domain Description: RVT_N Location: 2837582-2837825 bp Feature: domain Description: RVT_N Location: 2837582-2837825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837870-2838506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837870-2838506 bp Feature: domain Description: YkfC Location: 2838713-2838866 bp Feature: domain Description: YkfC Location: 283871 3-2838866 bp Feature: domain Description: HNH Note: nucleases Location: 2839043-2839181 bp Feature: domain Description: HNH Note: nucleases Location: 2839043-28391 81 bp Feature: gene Location: 2839370-2842144 bp Feature: domain Description: LptD Location: 2839565-2842130 bp Feature: domain Description: LptD Location: 2839565-28421 30 bp Feature: gene Location: 2842203-2843417 bp Feature: domain Description: PRK10770 Location: 2842215-2843409 bp Feature: domain Description: PRK1 0770 Location: 284221 5-2843409 bp Feature: gene Location: 4125255-4125824 bp Feature: domain Description: conj_PilL Location: 4125426-4125729 bp Feature: domain Description: conj_PilL Location: 41 25426-41 25729 bp Feature: gene Location: 4126023-4127282 bp Feature: domain Description: HepA Location: 4126038-4126179 bp Feature: domain Description: HepA Location: 41 26038-41 261 79 bp Feature: domain Description: SF2_C_SNF Location: 4126722-4127118 bp Feature: domain Description: SF2_C_SNF Location: 41 26722-41 271 1 8 bp Feature: gene Location: 4127350-4129068 bp Feature: domain Description: RVT_N Location: 4127407-4127644 bp Feature: domain Description: RVT_N Location: 41 27407-41 27644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4127695-4128346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 27695-41 28346 bp Feature: domain Description: GIIM Note: maturase Location: 4128400-4128631 bp Feature: domain Description: GIIM Note: maturase Location: 41 28400-41 28631 bp Feature: domain Description: HNHc Note: nucleases Location: 4128865-4129021 bp Feature: domain Description: HNHc Note: nucleases Location: 41 28865-41 29021 bp Feature: gene Location: 4129665-4130714 bp Feature: domain Description: DEXHc_Snf Location: 4129878-4130133 bp Feature: domain Description: DEXHc_Snf Location: 41 29878-41 301 33 bp Feature: gene Location: 4130815-4131120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), resist_ArsH (TIGR02690), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)
RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435), NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
conj_PilL (TIGR03748), HepA (COG0553)