myRT

myRT report for GCA_000480685.1_Pseu_aeru_BL23_V1

Download annotations/find similar RTs

Seq: KI518773.1 (1210547 bp)
Overview 1 RT 1: 927249-932368 bp Neighborhood of RT #1 [927249, 932379] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 927249-928577 bp Feature: domain Description: PRK13360 Location: 927255-928569 bp Feature: domain Description: PRK1 3360 Location: 927255-928569 bp Feature: gene Location: 928643-929005 bp Feature: domain Description: COG3450 Location: 928646-928991 bp Feature: domain Description: COG3450 Location: 928646-928991 bp Feature: gene Location: 929217-930914 bp Feature: domain Description: RVT_N Location: 929274-929517 bp Feature: domain Description: RVT_N Location: 929274-92951 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929562-930198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929562-9301 98 bp Feature: domain Description: YkfC Location: 930420-930555 bp Feature: domain Description: YkfC Location: 930420-930555 bp Feature: domain Description: HNHc Note: nucleases Location: 930702-930867 bp Feature: domain Description: HNHc Note: nucleases Location: 930702-930867 bp Feature: gene Location: 931976-932131 bp Feature: domain Description: rpmG Location: 931979-932123 bp Feature: domain Description: rpmG Location: 931 979-9321 23 bp Feature: gene Location: 932143-932379 bp Feature: domain Description: RpmB Location: 932146-932368 bp Feature: domain Description: RpmB Location: 9321 46-932368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)

Seq: KI518774.1 (1074159 bp)
Overview 1 RT 1: 154631-158520 bp 2 RT 2: 301345-309055 bp 3 RT 3: 530257-535543 bp Neighborhood of RT #1 [154631, 158520] DEXDc_RapA RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #2 [301345, 309108] restrict_AAA_1 restrict_AAA_1 COG4127 RVT-UG5 nitrilase Tra5 HTH_Tnp_1 Neighborhood of RT #3 [530257, 536115] RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 154631-154831 bp Feature: domain Description: DEXDc_RapA Location: 154658-154805 bp Feature: domain Description: DEXDc_RapA Location: 154658-154805 bp Feature: gene Location: 154899-156617 bp Feature: domain Description: RVT_N Location: 154956-155193 bp Feature: domain Description: RVT_N Location: 154956-155193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155244-155895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552 44-155895 bp Feature: domain Description: GIIM Note: maturase Location: 155949-156180 bp Feature: domain Description: GIIM Note: maturase Location: 155949-156180 bp Feature: domain Description: HNHc Note: nucleases Location: 156414-156570 bp Feature: domain Description: HNHc Note: nucleases Location: 156414-156570 bp Feature: gene Location: 157214-158269 bp Feature: domain Description: DEXHc_Snf Location: 157433-157688 bp Feature: domain Description: DEXHc_Snf Location: 157433-157688 bp Feature: gene Location: 158296-158520 bp Feature: gene Location: 301345-303096 bp Feature: domain Description: restrict_AAA_1 Location: 301348-302095 bp Feature: domain Description: restrict_AAA_1 Location: 301348-302 095 bp Feature: domain Description: restrict_AAA_1 Location: 302422-302809 bp Feature: domain Description: restrict_AAA_1 Location: 302 42 2 -302 809 bp Feature: gene Location: 304034-305026 bp Feature: domain Description: COG4127 Location: 304040-305015 bp Feature: domain Description: COG412 7 Location: 304040-305015 bp Feature: gene Location: 305396-307876 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 305399-305828 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 305399-30582 8 bp Feature: domain Description: nitrilase Location: 307190-307772 bp Feature: domain Description: nitrilase Location: 307190-307772 bp Feature: gene Location: 307970-308812 bp Feature: domain Description: Tra5 Location: 308051-308753 bp Feature: domain Description: Tra5 Location: 308051-308753 bp Feature: gene Location: 308845-309108 bp Feature: domain Description: HTH_Tnp_1 Location: 308851-309055 bp Feature: domain Description: HTH_Tnp_1 Location: 308851-309055 bp Feature: gene Location: 530257-530469 bp Feature: gene Location: 530604-531089 bp Feature: gene Location: 531163-535221 bp Feature: domain Description: RVT_N Location: 533668-533797 bp Feature: domain Description: RVT_N Location: 533668-533797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533848-534499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533848-534499 bp Feature: domain Description: GIIM Note: maturase Location: 534553-534784 bp Feature: domain Description: GIIM Note: maturase Location: 534553-534784 bp Feature: domain Description: HNHc Note: nucleases Location: 535018-535174 bp Feature: domain Description: HNHc Note: nucleases Location: 535018-535174 bp Feature: gene Location: 535363-536115 bp Feature: domain Description: DEXHc_Snf Location: 535366-535543 bp Feature: domain Description: DEXHc_Snf Location: 535366-535543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXDc_RapA (cd18011), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919), restrict_AAA_1 (TIGR04435), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: KI518768.1 (20758 bp)
Overview 1 RT 1: 3248-10509 bp Neighborhood of RT #1 [3248, 10568] AdoMet_MTases DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF Pro_Al_protease Feature: gene Location: 3248-4693 bp Feature: domain Description: AdoMet_MTases Location: 3371-3737 bp Feature: domain Description: AdoMet_MTases Location: 3 3 71-3 73 7 bp Feature: gene Location: 4792-5988 bp Feature: domain Description: DEXHc_Snf Location: 4990-5236 bp Feature: domain Description: DEXHc_Snf Location: 4990-523 6 bp Feature: domain Description: DEXHc_Snf Location: 5803-5962 bp Feature: domain Description: DEXHc_Snf Location: 5803 -5962 bp Feature: gene Location: 6585-8288 bp Feature: domain Description: RVT_N Location: 6642-6885 bp Feature: domain Description: RVT_N Location: 6642-6885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6930-7566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 0-7566 bp Feature: domain Description: GIIM Note: maturase Location: 7620-7851 bp Feature: domain Description: GIIM Note: maturase Location: 7620-7851 bp Feature: domain Description: HNHc Note: nucleases Location: 8085-8232 bp Feature: domain Description: HNHc Note: nucleases Location: 8085-823 2 bp Feature: gene Location: 8401-9450 bp Feature: domain Description: SF2_C_SNF Location: 8908-9286 bp Feature: domain Description: SF2_C_SNF Location: 8908-9286 bp Feature: gene Location: 10035-10568 bp Feature: domain Description: Pro_Al_protease Location: 10359-10509 bp Feature: domain Description: Pro_Al_protease Location: 103 59-10509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793), Pro_Al_protease (pfam02983)

Seq: KI518767.1 (31389 bp)
Overview 1 RT 1: 26403-31387 bp Neighborhood of RT #1 [26403, 31386] AdoMet_MTases DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNHc Feature: gene Location: 26403-27848 bp Feature: domain Description: AdoMet_MTases Location: 26526-26892 bp Feature: domain Description: AdoMet_MTases Location: 26526-26892 bp Feature: gene Location: 27947-29143 bp Feature: domain Description: DEXHc_Snf Location: 28145-28391 bp Feature: domain Description: DEXHc_Snf Location: 2814 5-28391 bp Feature: domain Description: DEXHc_Snf Location: 28958-29117 bp Feature: domain Description: DEXHc_Snf Location: 28958-29117 bp Feature: gene Location: 29740-31386 bp Feature: domain Description: RVT_N Location: 29797-30040 bp Feature: domain Description: RVT_N Location: 29797-3004 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30085-30721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30085-30721 bp Feature: domain Description: GIIM Note: maturase Location: 30775-31006 bp Feature: domain Description: GIIM Note: maturase Location: 30775-31006 bp Feature: domain Description: HNHc Note: nucleases Location: 31240-31387 bp Feature: domain Description: HNHc Note: nucleases Location: 3124 0-31387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: KI518776.1 (731364 bp)
Overview 1 RT 1: 631810-643057 bp 2 RT 2: 659316-668138 bp Neighborhood of RT #1 [631810, 643059] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [659316, 668167] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 631810-632580 bp Feature: domain Description: NERD Location: 631909-632242 bp Feature: domain Description: NERD Location: 631909-632242 bp Feature: domain Description: zf-C4_Topoisom Location: 632461-632575 bp Feature: domain Description: zf-C4_Topoisom Location: 632461-6325 75 bp Feature: gene Location: 632752-633873 bp Feature: domain Description: COG3177 Location: 632770-633862 bp Feature: domain Description: COG3177 Location: 632770-633862 bp Feature: gene Location: 634596-636281 bp Feature: domain Description: RVT_N Location: 634653-634893 bp Feature: domain Description: RVT_N Location: 63465 3-634893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634941-635577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634941-635 5 77 bp Feature: domain Description: GIIM Note: maturase Location: 635631-635862 bp Feature: domain Description: GIIM Note: maturase Location: 635 631-635 862 bp Feature: domain Description: HNH Note: nucleases Location: 636114-636252 bp Feature: domain Description: HNH Note: nucleases Location: 636114-63625 2 bp Feature: gene Location: 637362-641099 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 637470-638127 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 637470-638127 bp Feature: domain Description: PRK09776 Location: 638340-638811 bp Feature: domain Description: PRK09776 Location: 638340-638811 bp Feature: domain Description: PAS Location: 638868-639393 bp Feature: domain Description: PAS Location: 638868-639393 bp Feature: domain Description: PRK10060 Location: 639405-641049 bp Feature: domain Description: PRK10060 Location: 639405 -641049 bp Feature: gene Location: 641206-643059 bp Feature: domain Description: PRK05658 Location: 641218-643057 bp Feature: domain Description: PRK05 65 8 Location: 641218-64305 7 bp Feature: gene Location: 659316-660530 bp Feature: domain Description: PRK10770 Location: 659328-660522 bp Feature: domain Description: PRK10770 Location: 65 9328-6605 22 bp Feature: gene Location: 660589-663363 bp Feature: domain Description: LptD Location: 660784-663349 bp Feature: domain Description: LptD Location: 660784-663349 bp Feature: gene Location: 663496-665208 bp Feature: domain Description: RVT_N Location: 663553-663796 bp Feature: domain Description: RVT_N Location: 6635 5 3-663796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663841-664477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663841-664477 bp Feature: domain Description: YkfC Location: 664687-664837 bp Feature: domain Description: YkfC Location: 664687-664837 bp Feature: domain Description: HNH Note: nucleases Location: 665014-665152 bp Feature: domain Description: HNH Note: nucleases Location: 665 014-665 15 2 bp Feature: gene Location: 666480-667496 bp Feature: domain Description: COG3178 Location: 666483-667482 bp Feature: domain Description: COG3178 Location: 666483-667482 bp Feature: gene Location: 667493-668167 bp Feature: domain Description: NTP_transferase_like_1 Location: 667499-668138 bp Feature: domain Description: NTP_transferase_like_1 Location: 667499-668138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)