myRT

myRT report for GCA_000482065.1_Escherichia_coli_SCD2

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Seq: ATKA01000023.1 Escherichia coli SCD2 contig23, whole genome shotgun sequence (58144 bp)
Overview 1 RT 1: 30790-37184 bp Neighborhood of RT #1 [30790, 37207] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 30790-31707 bp Ori: ESA28229.1 Feature: domain Description: PFLE_PFLC Location: 30826-31681 bp Feature: domain Description: PFLE_PFLC Location: 30826-31 681 bp Feature: gene Location: 31844-32749 bp Feature: gene Location: 33235-33774 bp Ori: ESA28231.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33565-33643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33565-33643 bp Feature: gene Location: 33841-34323 bp Ori: ESA28232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33850-34090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33850-34090 bp Feature: domain Description: GIIM Note: maturase Location: 34138-34318 bp Feature: domain Description: GIIM Note: maturase Location: 341 38-3431 8 bp Feature: gene Location: 34873-36135 bp Ori: ESA28233.1 Feature: domain Description: YesM Location: 35386-36127 bp Feature: domain Description: YesM Location: 35386-361 27 bp Feature: gene Location: 36152-37207 bp Ori: ESA28234.1 Feature: domain Description: YesN Location: 36155-36545 bp Feature: domain Description: YesN Location: 361 55-36545 bp Feature: domain Description: YesN Location: 36887-37184 bp Feature: domain Description: YesN Location: 36887-371 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: ATKA01000032.1 Escherichia coli SCD2 contig32, whole genome shotgun sequence (31251 bp)
Overview 1 RT 1: 21139-28840 bp Neighborhood of RT #1 [21139, 28977] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 21139-22392 bp Ori: ESA27466.1 Feature: domain Description: proA Location: 21166-22357 bp Feature: domain Description: proA Location: 2 1166-2 2 357 bp Feature: gene Location: 22946-23416 bp Feature: gene Location: 23763-26972 bp Ori: ESA27468.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24291-24780 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 42 91-2 4780 bp Feature: domain Description: nitrilase Location: 26286-26883 bp Feature: domain Description: nitrilase Location: 2 62 86-2 6883 bp Feature: gene Location: 27288-28070 bp Ori: ESA27469.1 Feature: domain Description: AbiEi_3_N Location: 27300-27561 bp Feature: domain Description: AbiEi_3_N Location: 2 7300-2 7561 bp Feature: domain Description: AbiEi_3 Location: 27573-28029 bp Feature: domain Description: AbiEi_3 Location: 2 7573-2 802 9 bp Feature: gene Location: 28057-28977 bp Ori: ESA27470.1 Feature: domain Description: AbiEii Location: 28099-28840 bp Feature: domain Description: AbiEii Location: 2 8099-2 8840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: ATKA01000108.1 Escherichia coli SCD2 contig108, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 657-1935 bp Neighborhood of RT #1 [657, 2180] RVT-GII GIIM Feature: gene Location: 657-2180 bp Ori: ESA24349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ATKA01000046.1 Escherichia coli SCD2 contig46, whole genome shotgun sequence (70328 bp)
Overview 1 RT 1: 63053-69618 bp Neighborhood of RT #1 [63053, 69875] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 63053-63184 bp Feature: gene Location: 63992-66238 bp Ori: ESA25967.1 Feature: domain Description: AAA_15 Location: 63995-65003 bp Feature: domain Description: AAA_15 Location: 63995-65003 bp Feature: gene Location: 66353-67453 bp Ori: ESA25968.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66533-67067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66533-67067 bp Feature: gene Location: 68109-68978 bp Ori: ESA25969.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 68631-68802 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 68631-68802 bp Feature: gene Location: 69399-69875 bp Ori: ESA25970.1 Feature: domain Description: HTH_23 Location: 69477-69618 bp Feature: domain Description: HTH_23 Location: 694 77-69618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)