myRT

myRT report for GCA_000482245.1_LepHIscaffolds

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Seq: AWNH01000050.1 (10466 bp)
Overview 1 RT 1: 2-2884 bp Neighborhood of RT #1 [2, 2884] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-127 bp Feature: gene Location: 377-2053 bp Feature: domain Description: RVT_N Location: 419-665 bp Feature: domain Description: RVT_N Location: 41 9-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 3-1 352 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1658 bp Feature: domain Description: GIIM Note: maturase Location: 1 424-1 658 bp Feature: domain Description: HNHc Note: nucleases Location: 1868-2036 bp Feature: domain Description: HNHc Note: nucleases Location: 1 868-2036 bp Feature: gene Location: 2002-2322 bp Feature: gene Location: 2723-2884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000031.1 (74176 bp)
Overview 1 RT 1: 69601-74073 bp Neighborhood of RT #1 [69601, 74073] YeaD2 DUF820 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 69601-70740 bp Feature: domain Description: YeaD2 Location: 69646-70480 bp Feature: domain Description: YeaD2 Location: 69646-70480 bp Feature: gene Location: 70848-71603 bp Feature: domain Description: DUF820 Location: 70950-71334 bp Feature: domain Description: DUF82 0 Location: 70950-71334 bp Feature: gene Location: 71860-73587 bp Feature: domain Description: RVT_N Location: 71914-72160 bp Feature: domain Description: RVT_N Location: 71914-72 160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72208-72877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 08-72 877 bp Feature: domain Description: GIIM Note: maturase Location: 72940-73162 bp Feature: domain Description: GIIM Note: maturase Location: 72 940-73162 bp Feature: domain Description: HNHc Note: nucleases Location: 73387-73549 bp Feature: domain Description: HNHc Note: nucleases Location: 73387-73549 bp Feature: gene Location: 73855-74073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaD2 (COG1721), DUF820, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000001.1 (20657 bp)
Overview 1 RT 1: 16875-20642 bp Neighborhood of RT #1 [16875, 20656] PRK07583 HEAT RVT-GII GIIM HNHc Feature: gene Location: 16875-18209 bp Feature: domain Description: PRK07583 Location: 16887-18201 bp Feature: domain Description: PRK07583 Location: 16887-18201 bp Feature: gene Location: 18331-19020 bp Feature: domain Description: HEAT Location: 18349-19000 bp Feature: domain Description: HEAT Location: 183 49-19000 bp Feature: gene Location: 19190-20656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19328-19967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 28-19967 bp Feature: domain Description: GIIM Note: maturase Location: 20048-20279 bp Feature: domain Description: GIIM Note: maturase Location: 20048-20279 bp Feature: domain Description: HNHc Note: nucleases Location: 20474-20642 bp Feature: domain Description: HNHc Note: nucleases Location: 20474-20642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07583 (cytosine deaminase), HEAT (sd00044), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000083.1 (10788 bp)
Overview 1 RT 1: 2-4914 bp Neighborhood of RT #1 [2, 4919] RVT_N RVT-GII GIIM HNHc DDE_Tnp_Tn3 DUF4158 Feature: gene Location: 2-1768 bp Feature: domain Description: RVT_N Location: 53-299 bp Feature: domain Description: RVT_N Location: 53-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 7-1022 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1310 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1310 bp Feature: domain Description: HNHc Note: nucleases Location: 1541-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 154 1-1694 bp Feature: gene Location: 1968-4421 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3207-4374 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3207-4 374 bp Feature: gene Location: 4467-4919 bp Feature: domain Description: DUF4158 Location: 4485-4914 bp Feature: domain Description: DUF4 158 Location: 4 4 85-4 914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_Tn3 (pfam01526), DUF4158 (pfam13700)

Seq: AWNH01000107.1 (13350 bp)
Overview 1 RT 1: 104-4791 bp Neighborhood of RT #1 [104, 4826] RVT_N RVT-GII GIIM HNHc gidA Feature: gene Location: 104-328 bp Feature: gene Location: 746-2317 bp Feature: domain Description: RVT_N Location: 752-890 bp Feature: domain Description: RVT_N Location: 75 2-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1607 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1892 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 2117-2279 bp Feature: domain Description: HNHc Note: nucleases Location: 2117-2279 bp Feature: gene Location: 2368-2538 bp Feature: gene Location: 2916-4826 bp Feature: domain Description: gidA Location: 2949-4791 bp Feature: domain Description: gidA Location: 2949-4791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gidA (TIGR00136)

Seq: AWNH01000005.1 (90443 bp)
Overview 1 RT 1: 87616-90326 bp Neighborhood of RT #1 [87616, 90364] Uma2 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 87616-88059 bp Feature: domain Description: Uma2 Location: 87652-88048 bp Feature: domain Description: Uma2 Location: 876 52-88048 bp Feature: gene Location: 88151-88375 bp Feature: gene Location: 88793-90364 bp Feature: domain Description: RVT_N Location: 88799-88937 bp Feature: domain Description: RVT_N Location: 88799-88937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88985-89654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88985-896 54 bp Feature: domain Description: GIIM Note: maturase Location: 89717-89939 bp Feature: domain Description: GIIM Note: maturase Location: 89717-89939 bp Feature: domain Description: HNHc Note: nucleases Location: 90164-90326 bp Feature: domain Description: HNHc Note: nucleases Location: 9016 4-90326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000079.1 (70830 bp)
Overview 1 RT 1: 67985-70713 bp Neighborhood of RT #1 [67985, 70751] Uma2 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 67985-68446 bp Feature: domain Description: Uma2 Location: 68033-68435 bp Feature: domain Description: Uma2 Location: 68033-68435 bp Feature: gene Location: 68538-68762 bp Feature: gene Location: 69180-70751 bp Feature: domain Description: RVT_N Location: 69186-69324 bp Feature: domain Description: RVT_N Location: 69186-69324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69372-70041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6937 2-7 0041 bp Feature: domain Description: GIIM Note: maturase Location: 70104-70326 bp Feature: domain Description: GIIM Note: maturase Location: 7 0104-7 0326 bp Feature: domain Description: HNHc Note: nucleases Location: 70551-70713 bp Feature: domain Description: HNHc Note: nucleases Location: 7 0551-7 07 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000040.1 (91966 bp)
Overview 1 RT 1: 11973-17006 bp Neighborhood of RT #1 [11973, 17023] RVT-DGRs Avd_like Peptidase_C14 YfmG Feature: gene Location: 11973-12119 bp Feature: gene Location: 12738-12974 bp Feature: gene Location: 13011-13859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13017-13641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13017-13641 bp Feature: gene Location: 14041-14418 bp Feature: domain Description: Avd_like Location: 14059-14365 bp Feature: domain Description: Avd_like Location: 14059-14365 bp Feature: gene Location: 14558-17023 bp Feature: domain Description: Peptidase_C14 Location: 14570-15014 bp Feature: domain Description: Peptidase_C14 Location: 14570-15014 bp Feature: domain Description: YfmG Location: 16214-17006 bp Feature: domain Description: YfmG Location: 16214-17006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), Peptidase_C14 (pfam00656), YfmG (COG1262)

Seq: AWNH01000115.1 (346540 bp)
Overview 1 RT 1: 217313-219811 bp Neighborhood of RT #1 [217313, 219849] Csx1_III-U RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 217313-217444 bp Feature: gene Location: 217587-218300 bp Feature: domain Description: Csx1_III-U Location: 217902-218214 bp Feature: domain Description: Csx1_III-U Location: 2179 02-218214 bp Feature: gene Location: 218466-218660 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 218472-218622 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 218472-218622 bp Feature: gene Location: 218693-219574 bp Feature: domain Description: Cas1_I-II-III Location: 218696-219536 bp Feature: domain Description: Cas1_I-II-III Location: 21869 6-219 536 bp Feature: gene Location: 219574-219849 bp Feature: domain Description: Cas2_I_II_III Location: 219583-219811 bp Feature: domain Description: Cas2_I_II_III Location: 219 583-219 811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: AWNH01000071.1 (189288 bp)
Overview 1 RT 1: 243-1521 bp Neighborhood of RT #1 [243, 1526] RVT-CRISPR-like 23S_rRNA_IVP Uma2 Feature: gene Location: 243-698 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 435-486 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 435-486 bp Feature: domain Description: 23S_rRNA_IVP Location: 528-651 bp Feature: domain Description: 23S_rRNA_IVP Location: 528-651 bp Feature: gene Location: 723-866 bp Feature: gene Location: 924-1526 bp Feature: domain Description: Uma2 Location: 978-1521 bp Feature: domain Description: Uma2 Location: 978-1521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, 23S_rRNA_IVP (pfam05635), Uma2 (pfam05685)

Seq: AWNH01000108.1 (45562 bp)
Overview 1 RT 1: 104-3595 bp Neighborhood of RT #1 [104, 3762] RVT_N RVT-GII GIIM HNHc COP23 Feature: gene Location: 104-328 bp Feature: gene Location: 746-2317 bp Feature: domain Description: RVT_N Location: 752-890 bp Feature: domain Description: RVT_N Location: 752-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1607 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1892 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 2117-2279 bp Feature: domain Description: HNHc Note: nucleases Location: 211 7-2279 bp Feature: gene Location: 2368-2541 bp Feature: gene Location: 3124-3762 bp Feature: domain Description: COP23 Location: 3262-3595 bp Feature: domain Description: COP23 Location: 3262-3595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COP23 (pfam14218)

Seq: AWNH01000113.1 (72477 bp)
Overview 1 RT 1: 2-3580 bp Neighborhood of RT #1 [2, 3900] RVT_N RVT-GII GIIM HNHc DDE_Tnp_1 Feature: gene Location: 2-1768 bp Feature: domain Description: RVT_N Location: 53-299 bp Feature: domain Description: RVT_N Location: 53-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1022 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1310 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1310 bp Feature: domain Description: HNHc Note: nucleases Location: 1541-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 1541-1694 bp Feature: gene Location: 2259-2522 bp Feature: gene Location: 2545-3900 bp Feature: domain Description: DDE_Tnp_1 Location: 3076-3580 bp Feature: domain Description: DDE_Tnp_1 Location: 3076-3580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_1 (pfam01609)

Seq: AWNH01000017.1 (56472 bp)
Overview 1 RT 1: 9276-14481 bp Neighborhood of RT #1 [9276, 14489] RVT_N RVT-GII GIIM HNHc COG3464 COG3464 Feature: gene Location: 9276-9917 bp Feature: gene Location: 10328-10522 bp Feature: gene Location: 10798-12528 bp Feature: domain Description: RVT_N Location: 10852-11098 bp Feature: domain Description: RVT_N Location: 10852-11098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11146-11824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11146-11824 bp Feature: domain Description: GIIM Note: maturase Location: 11878-12109 bp Feature: domain Description: GIIM Note: maturase Location: 11878-12109 bp Feature: domain Description: HNHc Note: nucleases Location: 12334-12493 bp Feature: domain Description: HNHc Note: nucleases Location: 12334-12493 bp Feature: gene Location: 12707-12874 bp Feature: gene Location: 13038-14489 bp Feature: domain Description: COG3464 Location: 13281-13524 bp Feature: domain Description: COG3464 Location: 13 281-13 524 bp Feature: domain Description: COG3464 Location: 13647-14481 bp Feature: domain Description: COG3464 Location: 13 647-14481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3464 (Transposase )

Seq: AWNH01000032.1 (54462 bp)
Overview 1 RT 1: 49317-54069 bp Neighborhood of RT #1 [49317, 54086] PRK13889 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 49317-49895 bp Feature: gene Location: 50126-52162 bp Feature: domain Description: PRK13889 Location: 50129-50840 bp Feature: domain Description: PRK13889 Location: 50129-50840 bp Feature: gene Location: 52410-54086 bp Feature: domain Description: RVT_N Location: 52452-52698 bp Feature: domain Description: RVT_N Location: 52452-52698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52746-53385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52746-53385 bp Feature: domain Description: GIIM Note: maturase Location: 53457-53691 bp Feature: domain Description: GIIM Note: maturase Location: 53457-53691 bp Feature: domain Description: HNHc Note: nucleases Location: 53901-54069 bp Feature: domain Description: HNHc Note: nucleases Location: 53901-54069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AWNH01000059.1 (85636 bp)
Overview 1 RT 1: 82773-85519 bp Neighborhood of RT #1 [82773, 85557] Uma2 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 82773-83252 bp Feature: domain Description: Uma2 Location: 82806-83241 bp Feature: domain Description: Uma2 Location: 82806-83241 bp Feature: gene Location: 83344-83568 bp Feature: gene Location: 83986-85557 bp Feature: domain Description: RVT_N Location: 83992-84130 bp Feature: domain Description: RVT_N Location: 83992-84130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84178-84847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84178-84847 bp Feature: domain Description: GIIM Note: maturase Location: 84910-85132 bp Feature: domain Description: GIIM Note: maturase Location: 84910-85132 bp Feature: domain Description: HNHc Note: nucleases Location: 85357-85519 bp Feature: domain Description: HNHc Note: nucleases Location: 85357-85519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)