myRT

myRT report for GCA_000484655.1_ASM48465v1

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Seq: AXVN01000053.1 (28368 bp)
Overview 1 RT 1: 12463-15628 bp Neighborhood of RT #1 [12463, 16155] TnpV RVT-GII GIIM GAT1_Peptidase_E OAD_beta Feature: gene Location: 12463-12915 bp Feature: domain Description: TnpV Location: 12583-12907 bp Feature: domain Description: TnpV Location: 1 2583-1 2907 bp Feature: gene Location: 13207-13380 bp Feature: gene Location: 13431-14729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13686-14379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3686-1 4379 bp Feature: domain Description: GIIM Note: maturase Location: 14439-14658 bp Feature: domain Description: GIIM Note: maturase Location: 1 4439-1 4658 bp Feature: gene Location: 14840-15457 bp Feature: domain Description: GAT1_Peptidase_E Location: 14858-15320 bp Feature: domain Description: GAT1 _Peptidase_E Location: 1 4858-1 5320 bp Feature: gene Location: 15505-16155 bp Feature: domain Description: OAD_beta Location: 15520-15628 bp Feature: domain Description: OAD_beta Location: 1 5520-1 5628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-GII, GIIM (pfam08388), GAT1_Peptidase_E (cd03146), OAD_beta (pfam03977)

Seq: AXVN01000080.1 (19303 bp)
Overview 1 RT 1: 13029-19301 bp Neighborhood of RT #1 [13029, 19301] RVT-GII Feature: gene Location: 13029-17699 bp Feature: gene Location: 17860-18060 bp Feature: gene Location: 18435-18707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18594-18675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18594-18675 bp Feature: gene Location: 18825-19301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXVN01000184.1 (2508 bp)
Overview 1 RT 1: 270-2369 bp Neighborhood of RT #1 [270, 2404] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-548 bp Feature: gene Location: 587-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851-1670 bp Feature: domain Description: Intron_maturas2 Location: 1742-2045 bp Feature: domain Description: Intron_maturas2 Location: 1742-2045 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2369 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-23 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AXVN01000209.1 (1041 bp)
Overview 1 RT 1: 102-765 bp Neighborhood of RT #1 [102, 765] RVT-GII Feature: gene Location: 102-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-354 bp Feature: gene Location: 550-765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AXVN01000044.1 (33407 bp)
Overview 1 RT 1: 16949-24385 bp Neighborhood of RT #1 [16949, 25014] SbcC SbcC RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 Feature: gene Location: 16949-18436 bp Feature: gene Location: 18382-21915 bp Feature: domain Description: SbcC Location: 18850-19018 bp Feature: domain Description: SbcC Location: 1885 0-19018 bp Feature: domain Description: SbcC Location: 19396-21838 bp Feature: domain Description: SbcC Location: 19396-21838 bp Feature: gene Location: 21983-22306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22238-22295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22238-22295 bp Feature: gene Location: 22693-23469 bp Feature: domain Description: IstB_IS21_ATP Location: 22768-22846 bp Feature: domain Description: IstB_IS21_ATP Location: 22768-22846 bp Feature: domain Description: IstB_IS21 Location: 22855-23389 bp Feature: domain Description: IstB_IS21 Location: 2285 5 -23389 bp Feature: gene Location: 23476-25014 bp Feature: domain Description: COG4584 Location: 23566-24385 bp Feature: domain Description: COG45 84 Location: 235 66-24385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcC (COG0419), RVT-GII, IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: AXVN01000007.1 (93723 bp)
Overview 1 RT 1: 75694-88439 bp Neighborhood of RT #1 [75694, 88489] N6_Mtase COG4646 RVT-GII COG4646 HELICc RVT-GII Intron_maturas2 HNHc KOG1000 SpoVG SpoVG Feature: gene Location: 75694-80730 bp Feature: domain Description: N6_Mtase Location: 78025-78652 bp Feature: domain Description: N6 _Mtase Location: 78025-786 52 bp Feature: domain Description: COG4646 Location: 78679-80710 bp Feature: domain Description: COG46 46 Location: 786 79-80710 bp Feature: gene Location: 81246-81404 bp Feature: gene Location: 81408-83315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82446 bp Feature: gene Location: 83475-84467 bp Feature: domain Description: COG4646 Location: 83490-84066 bp Feature: domain Description: COG46 46 Location: 83490-8406 6 bp Feature: domain Description: HELICc Location: 84093-84438 bp Feature: domain Description: HELICc Location: 84093-84438 bp Feature: gene Location: 84590-84784 bp Feature: gene Location: 85017-86831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85281-86103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85281-86 103 bp Feature: domain Description: Intron_maturas2 Location: 86175-86607 bp Feature: domain Description: Intron_maturas2 Location: 86 175-86 6 07 bp Feature: domain Description: HNHc Note: nucleases Location: 86658-86802 bp Feature: domain Description: HNHc Note: nucleases Location: 86 6 58-86 802 bp Feature: gene Location: 86891-87844 bp Feature: domain Description: KOG1000 Location: 86939-87122 bp Feature: domain Description: KOG1000 Location: 86 939-87122 bp Feature: gene Location: 87878-88489 bp Feature: domain Description: SpoVG Location: 87896-88142 bp Feature: domain Description: SpoVG Location: 87896 -88142 bp Feature: domain Description: SpoVG Location: 88208-88439 bp Feature: domain Description: SpoVG Location: 88208-88439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HELICc (smart00490), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), SpoVG (pfam04026)

Seq: AXVN01000019.1 (54571 bp)
Overview 1 RT 1: 1584-6771 bp Neighborhood of RT #1 [1584, 6842] group_II_RT_mat MATE_Wzx_like RVT-GII GIIM RVT-GII PFLE_PFLC PFLE_PFLC FlaA1 Feature: gene Location: 1584-1817 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1731-1809 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17 31-1809 bp Feature: gene Location: 2070-3521 bp Feature: domain Description: MATE_Wzx_like Location: 2088-3282 bp Feature: domain Description: MATE_Wzx_like Location: 2088-3282 bp Feature: gene Location: 3740-4339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3776-3983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 7 6-3983 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4268 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4268 bp Feature: gene Location: 4349-5044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4610-5036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4610-5036 bp Feature: gene Location: 5516-6391 bp Feature: domain Description: PFLE_PFLC Location: 5546-5678 bp Feature: domain Description: PFLE_PFLC Location: 5546-567 8 bp Feature: domain Description: PFLE_PFLC Location: 5714-6254 bp Feature: domain Description: PFLE_PFLC Location: 57 14-6254 bp Feature: gene Location: 6618-6842 bp Feature: domain Description: FlaA1 Location: 6642-6771 bp Feature: domain Description: FlaA1 Location: 6642-67 7 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), MATE_Wzx_like (cd13128), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), FlaA1 (COG1086)

Seq: AXVN01000168.1 (3677 bp)
Overview 1 RT 1: 1485-3606 bp Neighborhood of RT #1 [1485, 3674] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 1485-2468 bp Feature: domain Description: INT_RitB_C_like Location: 1821-2406 bp Feature: domain Description: INT_RitB_C_like Location: 18 21-2406 bp Feature: gene Location: 2560-3462 bp Feature: domain Description: Phage_int_SAM_1 Location: 2569-2749 bp Feature: domain Description: Phage_int_SAM_1 Location: 2569-2749 bp Feature: domain Description: INT_RitC_C_like Location: 2830-3376 bp Feature: domain Description: INT_RitC_C_like Location: 28 30-3376 bp Feature: gene Location: 3507-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3513-3606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3513-3606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII