myRT

myRT report for GCA_000488135.1_Esch_coli_UMEA_3323-1_V1

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Seq: KI530678.1 Escherichia coli UMEA 3323-1 genomic scaffold addTH-supercont1.2, whole genome shotgun sequence (1253737 bp)
Overview 1 RT 1: 100585-106616 bp Neighborhood of RT #1 [100585, 106753] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 100585-100725 bp Ori: ESK42914.1 Feature: domain Description: SfsB Location: 100594-100666 bp Feature: domain Description: SfsB Location: 1 00594-1 00666 bp Feature: gene Location: 100722-101192 bp Feature: gene Location: 101539-104748 bp Ori: ESK42916.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102067-102556 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 02067-1 02556 bp Feature: domain Description: nitrilase Location: 104062-104659 bp Feature: domain Description: nitrilase Location: 1 04062-1 04659 bp Feature: gene Location: 105064-105846 bp Ori: ESK42917.1 Feature: domain Description: AbiEi_3_N Location: 105076-105337 bp Feature: domain Description: AbiEi_3_N Location: 1 05076-1 05337 bp Feature: domain Description: AbiEi_3 Location: 105349-105805 bp Feature: domain Description: AbiEi_3 Location: 1 05349-1 05805 bp Feature: gene Location: 105833-106753 bp Ori: ESK42918.1 Feature: domain Description: AbiEii Location: 105875-106616 bp Feature: domain Description: AbiEii Location: 1 05875-1 0661 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: KI530676.1 Escherichia coli UMEA 3323-1 genomic scaffold addTH-supercont1.18, whole genome shotgun sequence (92145 bp)
Overview 1 RT 1: 20832-26698 bp Neighborhood of RT #1 [20832, 26718] PRK09413 PHA02517 RVT-GII GIIM rve PRK08181 Feature: gene Location: 20832-21197 bp Ori: ESK23409.1 Feature: domain Description: PRK09413 Location: 20835-21195 bp Feature: domain Description: PRK09413 Location: 2 0835-2 1195 bp Feature: gene Location: 21287-21733 bp Ori: ESK23410.1 Feature: domain Description: PHA02517 Location: 21290-21731 bp Feature: domain Description: PHA02 517 Location: 2 12 90-2 1731 bp Feature: gene Location: 21850-23373 bp Ori: ESK23411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22123-22855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 12 3-2 2 855 bp Feature: domain Description: GIIM Note: maturase Location: 22930-23128 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 930-2 312 8 bp Feature: gene Location: 24467-25966 bp Ori: ESK23412.1 Feature: domain Description: rve Location: 24839-25232 bp Feature: domain Description: rve Location: 2 4839-2 52 32 bp Feature: gene Location: 25963-26718 bp Ori: ESK23413.1 Feature: domain Description: PRK08181 Location: 25987-26698 bp Feature: domain Description: PRK08181 Location: 2 5987-2 6698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK08181 (transposase; Validated)

Seq: KI530681.1 Escherichia coli UMEA 3323-1 genomic scaffold addTH-supercont1.5, whole genome shotgun sequence (2246658 bp)
Overview 1 RT 1: 2087509-2091773 bp Neighborhood of RT #1 [2087509, 2091781] group_II_RT_mat RVT-GII GIIM YesM Feature: gene Location: 2087509-2088414 bp Feature: gene Location: 2088900-2089232 bp Ori: ESK26867.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2089062-2089224 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2089062-2089224 bp Feature: gene Location: 2089487-2089969 bp Ori: ESK26868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089496-2089736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089496-208973 6 bp Feature: domain Description: GIIM Note: maturase Location: 2089784-2089964 bp Feature: domain Description: GIIM Note: maturase Location: 2089784-2089964 bp Feature: gene Location: 2090291-2090479 bp Feature: gene Location: 2090552-2091781 bp Ori: ESK26870.1 Feature: domain Description: YesM Location: 2091032-2091773 bp Feature: domain Description: YesM Location: 209103 2-2091773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), YesM (COG2972)